rs237363922 SNP Detail

Summary

• ID
  rs237363922
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:67184086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTAGTCT TCCTGAAACA CAAAGGGCAT
  AGGAAGGCTC TTTGTTGTGG CCCACGTTAC ACTGATTTCT TCTGAACCAT TAAAACAAGT
  TATCTTTATT TGGCTGATAG CTAGTTTCTG TAATGGTTAT TTAACACTCA ATGtccctct
  S
  tctgtctatc tttctccctg tctttgtttc tgtctgtctc ctctttttcc catctctctc
  ccttttctcc tttctctgtc ttttttctct ttttatgtct cccttttttg tctttttcac
  actgacattc tctctctctc tctctctctc                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319761792	CHEV_1_67191501	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237363922					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:67184086 () rs orientation: forward

Symbol	Name	Function Class
Cps1	carbamoyl-phosphate synthetase 1	within coordinates
Rr17157	regulatory region 17157	486 bp distal
Rr34361	regulatory region 34361	87 bp distal
Tssr7192	transcription start site region 7192	1977 bp downstream
Tssr7193	transcription start site region 7193	119 bp downstream
Tssr7194	transcription start site region 7194	92 bp downstream
Tssr7195	transcription start site region 7195	39 bp downstream
Tssr7196	transcription start site region 7196	within coordinates
Tssr7197	transcription start site region 7197	66 bp upstream