rs237380384 SNP Detail

Summary

• ID
  rs237380384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCACGCTT CTGCTCTGAG GTCCCTCTTA
  GCTGCTGGGC TGAGCCTGCT TTTGGGCTTC AACCCTGGGA GGATAGCAGG TTTTAGTTAT
  GGAAGGCTGG GTTCAGTAGT AGCGAACTTG TCTCTATGTC AAGGCTGTGG ATTGATCGTC
  Y
  CTGCTGTTAC TAGAATTGCG AGCCAGACCC TGGGCTCTGA GAATCTAATA AACCAGGTTA
  GTCACCATCC TTAATAAGTC GATTAAACAA GTAATGGTAA GATATAGAAA AAGGAGATTT
  ATTCAATACG GCCACATTGG GAAGAGGGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104753	CHEV_12_77355450	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237380384					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	424 bp proximal
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	835 bp upstream
Rr403350	regulatory region 403350	582 bp upstream
Rr468112	regulatory region 468112	345 bp proximal
Rr468113	regulatory region 468113	1264 bp proximal
Tssr113934	transcription start site region 113934	746 bp upstream
Tssr113935	transcription start site region 113935	781 bp upstream
Tssr113936	transcription start site region 113936	827 bp upstream
Tssr113937	transcription start site region 113937	869 bp upstream
Tssr113938	transcription start site region 113938	885 bp upstream
Tssr113939	transcription start site region 113939	908 bp upstream
Tssr113940	transcription start site region 113940	990 bp upstream
Tssr113941	transcription start site region 113941	1020 bp upstream
Tssr116711	transcription start site region 116711	583 bp downstream
Tssr116712	transcription start site region 116712	609 bp downstream