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rs237388654 SNP Detail
Summary
  • ID
    rs237388654
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr11:94843289 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTGTGCTTT GGGCAGCCAC
CTGCCCCTCT CAGGGGTTTG GAGCCAGGCA GGGTCACAGC AGACTGGAAA CATCGGACAT
GCATGTGCAG GCTGGGTGGG AGAGACCGTT CTATTCCTCA GTGCAATTGT GTTGCTGAAA
GACTACCTCG TTCTTGTCTT TGTGTGTCAC CGGGGCAACT GTGTGGGGGC GGGGATGGGG
R
CAGGGTGGCA GCACGCCCAG TTTGGTATCA AAGGTGCTAC ATCTCTGTGA AGGGGTGGGG
TGGGAAGGAA TTTCTGGTGC TATAGAAGCT GAGATGCTCC CTAGACCAGC AAATGTTTCT
TTTGTTCAAA GTATTTTTTA TTCTTTTTTT TTTTTTTTTT AATGGATAGG GACTTGTGTG
AATTGTTGGG GTTTTTTTTT                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss384336276 MGP_WTSI_11_94813777 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237388654 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss384336276 MGP_WTSI_11_94813777 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr11:94843289 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Col1a1 collagen, type I, alpha 1 within coordinates
D11Lis1 DNA segment, Chr 11, Lisse 1 855 bp proximal
Gm74287 predicted gene, 74287 1788 bp downstream
Rr454892 regulatory region 454892 within coordinates
Tssr3647 transcription start site region 3647 479 bp downstream
Tssr104269 transcription start site region 104269 1988 bp downstream
Tssr104270 transcription start site region 104270 1967 bp downstream
Tssr104271 transcription start site region 104271 1913 bp downstream
Tssr104272 transcription start site region 104272 1719 bp downstream
Tssr104273 transcription start site region 104273 1625 bp downstream
Tssr104274 transcription start site region 104274 1607 bp downstream
Tssr104275 transcription start site region 104275 1598 bp downstream
Tssr104276 transcription start site region 104276 1587 bp downstream
Tssr104277 transcription start site region 104277 1313 bp downstream
Tssr104278 transcription start site region 104278 1292 bp downstream
Tssr104279 transcription start site region 104279 1235 bp downstream
Tssr104280 transcription start site region 104280 1223 bp downstream
Tssr104281 transcription start site region 104281 1209 bp downstream
Tssr104282 transcription start site region 104282 1139 bp downstream
Tssr104283 transcription start site region 104283 986 bp downstream
Tssr104284 transcription start site region 104284 926 bp downstream
Tssr104285 transcription start site region 104285 896 bp downstream
Tssr104286 transcription start site region 104286 863 bp downstream
Tssr104287 transcription start site region 104287 839 bp downstream
Tssr104288 transcription start site region 104288 799 bp downstream
Tssr104289 transcription start site region 104289 791 bp downstream
Tssr104290 transcription start site region 104290 743 bp downstream
Tssr104291 transcription start site region 104291 728 bp downstream
Tssr104292 transcription start site region 104292 631 bp downstream
Tssr104293 transcription start site region 104293 524 bp downstream
Tssr104294 transcription start site region 104294 490 bp downstream
Tssr104295 transcription start site region 104295 446 bp downstream
Tssr104296 transcription start site region 104296 422 bp downstream
Tssr104297 transcription start site region 104297 399 bp downstream
Tssr104298 transcription start site region 104298 365 bp downstream
Tssr104299 transcription start site region 104299 331 bp downstream
Tssr104300 transcription start site region 104300 311 bp downstream
Tssr104301 transcription start site region 104301 191 bp downstream
Tssr104302 transcription start site region 104302 177 bp downstream
Tssr104303 transcription start site region 104303 158 bp downstream
Tssr104304 transcription start site region 104304 116 bp downstream
Tssr104305 transcription start site region 104305 94 bp downstream
Tssr104306 transcription start site region 104306 79 bp downstream
Tssr104307 transcription start site region 104307 62 bp downstream
Tssr104308 transcription start site region 104308 within coordinates
Tssr104309 transcription start site region 104309 13 bp upstream
Tssr104310 transcription start site region 104310 58 bp upstream
Tssr104311 transcription start site region 104311 154 bp upstream
Tssr104312 transcription start site region 104312 224 bp upstream
Tssr104313 transcription start site region 104313 240 bp upstream
Tssr104314 transcription start site region 104314 656 bp upstream
Tssr110222 transcription start site region 110222 1565 bp upstream
Tssr110223 transcription start site region 110223 1206 bp upstream
Tssr110224 transcription start site region 110224 1142 bp upstream
Tssr110225 transcription start site region 110225 926 bp upstream
Tssr110226 transcription start site region 110226 886 bp upstream
Tssr110227 transcription start site region 110227 873 bp upstream
Tssr110228 transcription start site region 110228 813 bp upstream
Tssr110229 transcription start site region 110229 793 bp upstream
Tssr110230 transcription start site region 110230 756 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory