rs237402319 SNP Detail

Summary

• ID
  rs237402319
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGGTTGG TTGGTGGCTT
  ACAGCTACTC ACAACTCTAG TTGTGTTCCT AACCGCTGAG CCATCTCTCC AGTACCAGCA
  TAGGAGTCTT CATAATTAGC TCCTGGCCCT GCTTAGAGAT CTATCCTTTC TTTTGATAAT
  GCCATTTAAC CACCAAATTC TTTCTTTAAA TGTACTAGTC TTGCTCTCAT TCACCTTAAG
  Y
  CCTCTACATG AACTGTTCAC TCCACCAGAA GAGCTCTCCC TACAAAACCC CAAATAATAG
  TTGGCTGCCT GAATTCTTCA AGTTTCCACT CCAACTTGAT ACCCTCATTG TATCCTACTC
  TAACCCTTCA TAATCTTTCA TGCTCTCATA ACCTCCACTG ATCATTTCTT TCTCATAGCA
  CAGTCAAATA GTAATAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388621	CHEV_7_116077015	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237402319					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	765 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	567 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	914 bp upstream
Rr400539	regulatory region 400539	656 bp upstream
Rr652951	regulatory region 652951	798 bp distal
Rr652952	regulatory region 652952	426 bp proximal
Rr652953	regulatory region 652953	646 bp proximal
Tssr68456	transcription start site region 68456	904 bp upstream
Tssr68457	transcription start site region 68457	1016 bp upstream