rs237405405 SNP Detail

Summary

• ID
  rs237405405
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24851506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCAACTG AGGAACAAAT
  CCACACACGT GCACACACTA TCTATAAAGA TAGTGTGAAG ATAAAGACTA TGTGTGTGTG
  TATACTGTAT CATATATATT ATATTATGTT ATACAATTAT GTTAAATAAT TATATAATTT
  AATATATACA ATGTTATATA TAACATATTA TGCATATTAT ATATAATGTT ATCATAATGT
  G
  TAATTGTATA TTATATATAA TTTACTTATA TATTTTATTA TATCATATAT AATATATCAT
  ATATTACATA ATATAACACA ATATATCATA CTATATATAA TACTGTAATA ATAAATATAT
  AATCTATAAT TATATATAGG ATCTCTATAT ATAGTTCTGG CTGGCCTAGA ACTTGCTATG
  TAAAACAAAC TGGCCTCGAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss364293534	MGP_WTSI_5_24152326	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs237405405					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364293534	MGP_WTSI_5_24152326	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24851506 () rs orientation: forward

Symbol	Name	Function Class
1700022A21Rik	RIKEN cDNA 1700022A21 gene	1176 bp upstream
Tssr45438	transcription start site region 45438	1045 bp downstream
Tssr45439	transcription start site region 45439	1038 bp downstream
Tssr45440	transcription start site region 45440	1025 bp downstream
Tssr45441	transcription start site region 45441	1008 bp downstream
Tssr45442	transcription start site region 45442	1002 bp downstream