rs237413626 SNP Detail

Summary

• ID
  rs237413626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115056310 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTGCCCTG TCCATTGATT CACCATTCAT
  cccccacccc catccccacc cttccaccac cacccccTCC GCTCCCGCCC CCGCCTCCCA
  TTCTTTCCTT TGGACTTTAG CACCAGCACA GATAGCCAGC AGCCTCCCCT CACTCCACAT
  W
  CACACCAAGT TGCACTCTCT GGTTGTACTG TTGGGTGCTG GAGGGCAGTG GCGAGGCTGC
  TGCGGAAGGC TCTGTATCAG AATGTTTTGT ATCTAAAAAG TCTGTGGCTG CCTGCTGGCA
  GATCTGTCTT CCTGAGAGGA CAAAGAATCA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323861542	CHEV_11_115026798	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237413626					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115056310 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4109	CpG island 4109	1155 bp distal
Cpgi4110	CpG island 4110	350 bp distal
Gm72084	predicted gene, 72084	1162 bp upstream
Nherf1	NHERF family PDZ scaffold protein 1	within coordinates
Rr459784	regulatory region 459784	672 bp distal
Rr459785	regulatory region 459785	894 bp distal
Rr459786	regulatory region 459786	1377 bp proximal