rs237420382 SNP Detail

Summary

• ID
  rs237420382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184468510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGTTTTG TTTTGTTTTG
  TTTTGTTTTG TTTGGAAGGA GAGAGAAACA AATATTTGTA AAGAAAACAG AAGTAGAAAT
  GCAGCATGTC CTGGTATTGA AGACTTTGAG AGACTTGCCT GCTCCTCCAC CAGCTAGAGT
  TAGATTTATG GCCCGCTGGT CCAGTTCACA ATTGTCGGTG GATGCAGGAC GTTGGGTGGG
  Y
  GGGTGGGGCT TCTAAATATT ACAGTTTAGG CTCTAGAGAA CATTTACAAG GAAAGAGAGA
  GAGGCTGTGA GGGAGAGAAC TATTCTAAAC AGACTCACCT GTTTTCTGAG CCCTTGGGGT
  TGGTTACTCC TGTTGGGGGG AGGGACTTTC TATGAGGTAG ATGGAGCAAT AGGACTGTAG
  CCATTTGATC TATTCACACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352673793	MGP_WTSI_1_186560192	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237420382					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352673793	MGP_WTSI_1_186560192	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184468510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1159	CpG island 1159	1567 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425268	regulatory region 425268	239 bp distal
Rr425269	regulatory region 425269	1499 bp proximal
Rr425270	regulatory region 425270	1762 bp proximal
Tssr10590	transcription start site region 10590	904 bp downstream
Tssr15648	transcription start site region 15648	1286 bp upstream