rs237422168 SNP Detail

Summary

• ID
  rs237422168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128204684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCCAC CCTCCACCGC
  TGAACTTCGG GGTGCCGGGC GACCCCCTCC GGTCCTGCGC GGACGTCTGT GCCTGCCTCT
  CACCTCATTG GACGCGGCGG CCGCGGAGGG CCCGGGGGCG GGGTCGGGAC GGAGCGCGCG
  CCCCGGCAGA GCGAGAAGCC GCAGCAGCTC CGGGCGGCCG CGCGCGTCGG GGCCGGGAGC
  Y
  TCCGCGCGCC CGCAGAGGCC ATGCGCGCGC CCCTGCCTGG CACTCCCGGC GGCGGCGAGC
  TGTAGGGGAG GCCGGGCAGG AAGGGCGGCG CGAGCTCCGG CTGCCTTCGC CCTGCTCCGG
  CCCGCGCGCC GGATAGGCTG TCACTGAAGC GGTGACCGCA GCTCTGGGTC CCCTCACGTC
  ACGCCGTTGC CAGGGATCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382203291	MGP_WTSI_10_127805871	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237422168					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382203291	MGP_WTSI_10_127805871	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128204684 () rs orientation: forward

Symbol	Name	Function Class
Coq10a	coenzyme Q10A	within coordinates
Cpgi2395	CpG island 2395	within coordinates
Rr369103	regulatory region 369103	146 bp upstream
Tssr99854	transcription start site region 99854	124 bp upstream
Tssr99855	transcription start site region 99855	75 bp downstream
Tssr99856	transcription start site region 99856	128 bp downstream
Tssr99857	transcription start site region 99857	267 bp downstream
Tssr99858	transcription start site region 99858	307 bp downstream