rs237428568 SNP Detail

Summary

• ID
  rs237428568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184466963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAGCCC AAACGCATCT
  GCGGCATTAG AAACCAGGAG TGCCCCGCAG ATCAAAGGCT AGGCTGCAAG GACTGCCTCC
  TCCGCAGCTC AGCTGTAACT GCATCATATC TGAGCGATCC TCCGTTTTCC CAAGCCTGAG
  GCACCTTTGC AGCCGTCGCA GCCCAGCGCA GCCTTGTCAC CCGAGGCCTA ATCGGAGCTC
  Y
  CGGTGCAAAA GAAAGGGAAG GAGAGGAGAG GAGAGGAGAG GAGAGGAGAG GAGAGGAGAG
  GAGAGGAGAG GAGAGGAGAG GAGAGGAGAG GAGAGGAGAG GAGAGGAGAG GAGAGGAGAG
  GAGAGGAAAA GAAAAGAAAA GAAAAGAAAA GAAAAGAAAA GAAAAGAAAA GAAAAGAGGG
  GAAGGACTTT GGGTCACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss352673767	MGP_WTSI_1_186558645	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs237428568					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352673767	MGP_WTSI_1_186558645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184466963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1158	CpG island 1158	1527 bp distal
Cpgi1159	CpG island 1159	20 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr396693	regulatory region 396693	1916 bp downstream
Rr425266	regulatory region 425266	1982 bp distal
Rr425267	regulatory region 425267	599 bp distal
Rr425268	regulatory region 425268	within coordinates
Tssr10589	transcription start site region 10589	1962 bp downstream
Tssr10590	transcription start site region 10590	640 bp upstream
Tssr15648	transcription start site region 15648	254 bp downstream