rs237439181 SNP Detail

Summary

• ID
  rs237439181
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:98308068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGGAAG GCTCTAACTC
  TGCCAGGTGC TCAGACACAC ATGGCCTCAC CAAAGCTCAC CCTAACTGAG GAGATAGGAG
  CTCATTCATT TTACAGATAA AATCAACTTA ATGGATTCCG TAGAGTAGTG GGGAGGGGCA
  TGGAATTCTT GAACTCTTTG GTGGAGAGCA GAAAGAGAGG AGAAGGCACA GGGAGTCCTC
  K
  ACAGTGTTAT TTCTCCCAAC TGATCTAGTG GGGCAGGGTG ATGTAGGTCT CTAACACCTT
  TGCCCCTGCT GGAAGTCCCC TGGTTTGCTA CTGCAAAGCT GGGATTTGAC TGAGGCTCCT
  CCCCTGATAC CCACTGAGCC CTGAGCTCCT TTCAGCCTTT CACCAAGTTC CTAACCCTAT
  AGCACAGTAG GCAGCATCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323129387	CHEV_9_98326434	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237439181					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98308068 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	322 bp distal
Rbp1	retinol binding protein 1, cellular	Intron
Rr685258	regulatory region 685258	1365 bp proximal
Tssr2984	transcription start site region 2984	911 bp downstream
Tssr86646	transcription start site region 86646	1183 bp downstream
Tssr86647	transcription start site region 86647	1110 bp downstream
Tssr86648	transcription start site region 86648	1080 bp downstream
Tssr86649	transcription start site region 86649	1045 bp downstream
Tssr86650	transcription start site region 86650	685 bp downstream
Tssr86651	transcription start site region 86651	502 bp downstream