rs237449624 SNP Detail

Summary

• ID
  rs237449624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110362084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCGGTGG CGGCGCGCGG
  AGTAACGGGC CCCGGGCGGC TTCTCGCGGT CGTGGTGGAG GGCAGGCCGG GCGGAGCTCC
  TGGAGGCCGC CTCGCTTGGC CTCGGCTGGC CCGGCGGTTG GGCCTGGCGC GGAGAAGGCT
  GCTCGCGTCG CCGCGGCGGT TGGGGCGGGC GGCCCGGTGG GGGAGGGGCG GCCACGGCCT
  Y
  CTCTGCCGTT GCCGCGTCCT CGGTCGGCCT GCTTAGGTTC GGCGTTCCGC GCAGCTCCTC
  CAGGACACTC GGTGGCGTCC CGGGCTTCTG TTGCAAACCA CGGTGCATAG TCCGAGGCGC
  CGCAAAGGCC GACGCCGGCG TCAGGGCGCC GGCTCGTGTA GGCCGAGAAT CCTCGGGCTC
  GGGTGGAAGC TCGGCCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss378905114	MGP_WTSI_9_110435520	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs237449624					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378905114	MGP_WTSI_9_110435520	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110362084 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22381	CpG island 22381	within coordinates
Gm69936	predicted gene, 69936	659 bp upstream
Rr687129	regulatory region 687129	1939 bp distal
Rr687130	regulatory region 687130	670 bp distal
Rr687131	regulatory region 687131	649 bp distal
Rr687132	regulatory region 687132	409 bp distal
Rr687133	regulatory region 687133	within coordinates
Rr687134	regulatory region 687134	147 bp distal
Rr687135	regulatory region 687135	61 bp proximal
Setd2	SET domain containing 2	within coordinates
Tssr3033	transcription start site region 3033	288 bp downstream
Tssr87391	transcription start site region 87391	549 bp downstream
Tssr87392	transcription start site region 87392	416 bp downstream
Tssr87393	transcription start site region 87393	376 bp downstream
Tssr87394	transcription start site region 87394	324 bp downstream
Tssr91630	transcription start site region 91630	654 bp upstream
Tssr91631	transcription start site region 91631	238 bp upstream
Tssr91632	transcription start site region 91632	215 bp upstream
Tssr91633	transcription start site region 91633	190 bp upstream
Tssr91634	transcription start site region 91634	170 bp upstream
Tssr91635	transcription start site region 91635	77 bp upstream
Tssr91636	transcription start site region 91636	58 bp upstream