rs237462085 SNP Detail

Summary

• ID
  rs237462085
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:117162248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTA AAGACCTATG GCCCTCTATC
  C
  GTTCTTAGGA AAAAACAAAA CAAAA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324842599	CHEV_14_117324058	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237462085					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:117162248 () rs orientation: forward

Symbol	Name	Function Class
Gpc6	glypican 6	479 bp upstream
Rr497535	regulatory region 497535	104 bp proximal
Rr497536	regulatory region 497536	1111 bp proximal
Rr497537	regulatory region 497537	1302 bp proximal
Tssr127141	transcription start site region 127141	369 bp upstream
Tssr127142	transcription start site region 127142	423 bp upstream
Tssr127143	transcription start site region 127143	455 bp upstream
Tssr127144	transcription start site region 127144	543 bp upstream
Tssr127145	transcription start site region 127145	669 bp upstream
Tssr127146	transcription start site region 127146	680 bp upstream
Tssr127147	transcription start site region 127147	709 bp upstream
Tssr127148	transcription start site region 127148	722 bp upstream
Tssr127149	transcription start site region 127149	936 bp upstream
Tssr127150	transcription start site region 127150	967 bp upstream