rs237467885 SNP Detail

Summary

• ID
  rs237467885
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60194166 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACGGGTCCA TGGAGCTACA GGTACAGGCA
  GGTGAGGTAT TCTGCACAGG TGGCCATGGC TTGGGAGTCC AGGGCAGGTG GGCAGGCAGG
  CCGGTGGGGC TGGAGAGGTG TCTGCATACC TGCCACATGA CTACTAGTTT CGTGTAAGAA
  K
  TGGGTGCATG TATGTGGGGT GCAGACGTGT GATTATCTTG TGTGTGTGTC TATTTGTGAC
  AGAGTGACCT TTTTTTTTTT TGTTTTGTTT TTTTTTAATG TAAGAGGGTG TGTATATCTG
  AACCTACAGT GTCAGTGCTT GTGAAAAAAT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325147	CHEV_10_59821135	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237467885					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60194166 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Tssr93621	transcription start site region 93621	350 bp downstream
Tssr93622	transcription start site region 93622	266 bp downstream
Tssr93623	transcription start site region 93623	95 bp upstream
Tssr97721	transcription start site region 97721	287 bp upstream
Tssr97722	transcription start site region 97722	153 bp upstream
Tssr97723	transcription start site region 97723	121 bp upstream
Vsir	V-set immunoregulatory receptor	within coordinates