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rs237469882 SNP Detail
Summary
  • ID
    rs237469882
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:8060171 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTGAAGGAAT CCATGAACTT
CTCCAGTAAG CATGTGAGAA TGGAGCATGA GGGTGAGATA GTATTTGATG GAAAGGCCAT
TGAGGGGAAA TCAGACACAG TCGCAAGTTT ACACACAGAG AAAAATGAAG TAGAGTTTAA
TAATGGTATG ACTGTCAAAG TAAACAATCA GCTCACCCTT GACAGTCACA CAAAGTACTT
Y
CACAAGTTGA GTGTTCCTAG GCTGGACTTC TCCAGTAAGG CTTCTCTTAA TAATGAAATC
AAGACACTAT TAGAAGCTGG ACATGTGGCA TTGACATCTT CAGGGACAGG GTCATGGAAC
TGGGCCTGTC CCAACTTCTC GGATGAAGGC ATACATTCGT CCCAAATTAG CTTTACTGTG
GATGGTCCCA TTGCTTTTGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss385064702 MGP_WTSI_12_8016977 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237469882 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss385064702 MGP_WTSI_12_8016977 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:8060171 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apob apolipoprotein B within coordinates
Tssr3782 transcription start site region 3782 1459 bp downstream
Tssr112644 transcription start site region 112644 1881 bp downstream
Tssr112645 transcription start site region 112645 1779 bp downstream
Tssr112646 transcription start site region 112646 1750 bp downstream
Tssr112647 transcription start site region 112647 1578 bp downstream
Tssr112648 transcription start site region 112648 1556 bp downstream
Tssr112649 transcription start site region 112649 1074 bp downstream
Tssr112650 transcription start site region 112650 994 bp downstream
Tssr112651 transcription start site region 112651 942 bp downstream
Tssr112652 transcription start site region 112652 912 bp downstream
Tssr112653 transcription start site region 112653 893 bp downstream
Tssr112654 transcription start site region 112654 879 bp downstream
Tssr112655 transcription start site region 112655 856 bp downstream
Tssr112656 transcription start site region 112656 836 bp downstream
Tssr112657 transcription start site region 112657 822 bp downstream
Tssr112658 transcription start site region 112658 789 bp downstream
Tssr112659 transcription start site region 112659 710 bp downstream
Tssr112660 transcription start site region 112660 586 bp downstream
Tssr112661 transcription start site region 112661 351 bp downstream
Tssr112662 transcription start site region 112662 110 bp downstream
Tssr112663 transcription start site region 112663 115 bp upstream
Tssr112664 transcription start site region 112664 140 bp upstream
Tssr112665 transcription start site region 112665 305 bp upstream
Tssr112666 transcription start site region 112666 314 bp upstream
Tssr112667 transcription start site region 112667 361 bp upstream
Tssr112668 transcription start site region 112668 499 bp upstream
Tssr112669 transcription start site region 112669 584 bp upstream
Tssr112670 transcription start site region 112670 637 bp upstream
Tssr112671 transcription start site region 112671 752 bp upstream
Tssr112672 transcription start site region 112672 1331 bp upstream
Tssr112673 transcription start site region 112673 1374 bp upstream
Tssr112674 transcription start site region 112674 1475 bp upstream
Tssr112675 transcription start site region 112675 1502 bp upstream
Tssr112676 transcription start site region 112676 1605 bp upstream
Tssr112677 transcription start site region 112677 1755 bp upstream
Tssr112678 transcription start site region 112678 1879 bp upstream
Tssr112679 transcription start site region 112679 1904 bp upstream
Tssr112680 transcription start site region 112680 1923 bp upstream
Tssr112681 transcription start site region 112681 1970 bp upstream
Tssr112682 transcription start site region 112682 1983 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory