rs237475877 SNP Detail

Summary

• ID
  rs237475877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140688095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTAATCC CAGCTCTCTG
  CAGTTCTTTA CCTGTAGGAA GATCTGAAGT TGGGGACAGT GGACAGCCTG TGGGTCCTTG
  GTGGACAGCC TATAAGCTAC ATCACCCATC TTTCCTATTG TCATCTTCCT TGGGGTTAGA
  GAGGAATTAG GTGAGCAGCT CGCTCACTTA CCACAGCATT CCAGAGGCTG GCACCAGCCA
  Y
  ATACTAGGTA CCCTTTCTGG CTGCTTTGGT TTTGGTTTTG TGTGTTTTGA GGCAGGGTCT
  CAAGTATCCC AGATGGACTC GACCTCATTA AGTAGCGGAG GGTGAGCTTG GTTCTCCTAC
  TGTCTCCATA TGCCGGGCAT GCAACTTCTG TACCGACGTG ACGTTCATCT TTTGATCACT
  TCAGTCACTT AACAAGTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363508361	MGP_WTSI_4_140516699	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237475877					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363508361	MGP_WTSI_4_140516699	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140688095 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15201	CpG island 15201	325 bp proximal
Gm34431	predicted gene, 34431	within coordinates
Gm68270	predicted gene, 68270	within coordinates
Rr367768	regulatory region 367768	within coordinates
Rr603592	regulatory region 603592	within coordinates
Rr603593	regulatory region 603593	390 bp proximal
Rr603594	regulatory region 603594	446 bp proximal
Rr603595	regulatory region 603595	503 bp proximal
Rr603596	regulatory region 603596	1947 bp proximal
Sdhb	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	487 bp upstream
Tssr40003	transcription start site region 40003	498 bp upstream
Tssr40004	transcription start site region 40004	517 bp upstream
Tssr40005	transcription start site region 40005	588 bp upstream
Tssr40006	transcription start site region 40006	620 bp upstream