rs237490609 SNP Detail

Summary

• ID
  rs237490609
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8056970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGACCACA CACACAGTCT
  GAACATTGCA GGTCTCTCAC TGGACTTCTT CTCAAAAATG GACAATATTT ACAGTGGAGA
  CAAGTTCTAT AAGCAGAATT TTAACTTACA GCTACAGCCC TATTCTTTCA TAACTACTTT
  AAGCAACGAC CTGAGATATG GTGCTCTAGA TTTGACCAAC AATGGAAGGT TTCGGCTGGA
  R
  CCACTGAAGC TGAATGTGGG TGGCAACTTT AAAGGAACCT ATCAAAATAA TGAGCTGAAA
  CATATCTATA CCATATCTTA TACTGACCTG GTAGTAGCAA GTTACAGAGC AGACACTGTG
  GCTAAGGTTC AGGGTGTCGA ATTCAGCCAT AGGCTAAATG CAGACATTGA AGGACTGACT
  TCCTCTGTTG ATGTCACTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385064667	MGP_WTSI_12_8013776	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237490609					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385064667	MGP_WTSI_12_8013776	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8056970 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	1726 bp upstream
Tssr112627	transcription start site region 112627	1982 bp downstream
Tssr112628	transcription start site region 112628	879 bp downstream
Tssr112629	transcription start site region 112629	718 bp downstream
Tssr112630	transcription start site region 112630	578 bp downstream
Tssr112631	transcription start site region 112631	341 bp downstream
Tssr112632	transcription start site region 112632	310 bp downstream
Tssr112633	transcription start site region 112633	234 bp downstream
Tssr112634	transcription start site region 112634	89 bp downstream
Tssr112635	transcription start site region 112635	3 bp downstream
Tssr112636	transcription start site region 112636	459 bp upstream
Tssr112637	transcription start site region 112637	532 bp upstream
Tssr112638	transcription start site region 112638	604 bp upstream
Tssr112639	transcription start site region 112639	831 bp upstream
Tssr112640	transcription start site region 112640	884 bp upstream
Tssr112641	transcription start site region 112641	938 bp upstream
Tssr112642	transcription start site region 112642	990 bp upstream
Tssr112643	transcription start site region 112643	1097 bp upstream
Tssr112644	transcription start site region 112644	1310 bp upstream
Tssr112645	transcription start site region 112645	1412 bp upstream
Tssr112646	transcription start site region 112646	1438 bp upstream
Tssr112647	transcription start site region 112647	1612 bp upstream
Tssr112648	transcription start site region 112648	1624 bp upstream