rs237496997 SNP Detail

Summary

• ID
  rs237496997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117582720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAGAGC ATTACTTACT
  GAAAGCATAT TTTAAAATAT CTTTAAAAGT CTAAACAGGC CGGGCGGTGG TGGCGCACGC
  CTTTAATTCC AGCACTCAGG AGGCAGAGGC AGGCGGATTT CTGAGTTCGA GGCCAGCCTG
  GTCTACAGAG TGAGTTCCAG GACAGCCAGG GCTATACAGA GAAACCCTGT CTCGAAAAAC
  Y
  AAAAATAACC GTCTAAACAG GTAAGAGTGG ATGGACAACT AACTGTCGTC TACTGTAGAT
  TTAAACATAT TTTGGCGTAT TTGCCTCGAA AAACTTTAAA CCACAGAATT TTTTACCCAC
  GAAGTTTTTT TTTTTTTTTA GTAAAACCTA AGAAGCAAGT ACATTTACCT GTATGCCCAA
  GATATTAATT GCACTTCTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499181	CHEV_10_117183871	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237496997					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117582720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	1030 bp distal
Cpgi2239	CpG island 2239	160 bp distal
Gm66856	predicted gene, 66856	within coordinates
Rr439610	regulatory region 439610	852 bp distal
Rr439611	regulatory region 439611	324 bp distal
Rr439612	regulatory region 439612	within coordinates
Slc35e3	solute carrier family 35, member E3	457 bp upstream
Tssr99471	transcription start site region 99471	465 bp upstream
Tssr99472	transcription start site region 99472	397 bp upstream