rs237514606 SNP Detail

Summary

• ID
  rs237514606
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112684292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTGAGT GCTGGGATTA
  AAGGTGTGTG CTACCACACC CAGCAGCAGT TTACATCTGT AATCCCAGCA CTGGGGAGAT
  GGAGACAGGA GGATTCCTGA GACTTACTGG TCAGCAGGAC GACATGGTGA GCTCCAGGCC
  AATGAAAGGC AGACGCCGTT CCTGACAATG ACACCTGCGG TTCCCCGGGA AGGCGGGGGG
  K
  GGGGGGGGTG TCTCCACACA CATGCCTGCA CACACAGCAC ACATTAAGGA GAGAGATTTG
  GAAAGGTGCA TCATGGGAGT GTCTGTGAGG GCACTTCCAC TGAAGATTAA CTAAACGGAG
  ACAACTTGCC CAGGATGTGA GGTCACTTTC CACAGGCTAG GAGAAGAGAG AAGTGATTGA
  TTATAGGCCA ATATTCTCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SM/J	SPRET/EiJ
ss387391246	MGP_WTSI_12_113956069	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	RF/J	SM/J	SPRET/EiJ
rs237514606					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387391246	MGP_WTSI_12_113956069	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112684292 () rs orientation: forward

Symbol	Name	Function Class
Gm46382	predicted gene, 46382	within coordinates
Gm59466	predicted gene, 59466	within coordinates
Rr473580	regulatory region 473580	1010 bp distal
Rr473581	regulatory region 473581	430 bp distal
Rr473582	regulatory region 473582	519 bp distal
Tssr115398	transcription start site region 115398	1379 bp upstream