rs237532813 SNP Detail

Summary

• ID
  rs237532813
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGCGAT TCTCCTGGAG
  ACTGAACTTG GATACGTTAG CTCAGCACTT GGACAAGATA ATGACCTTTC CTCAGCAACG
  TGAACCCTAC TCGGGGCCAA CTCTCTTCCT GCTTGGTGGA AATTCTACAT ATGTACAGTA
  AGCCGGTGTG GGACCATAGG AAGGGGCATG CTTTGCCCAC CACCAGCTAT GGGAGCCTGC
  R
  TGGGCTAGGG GAGGCGGGGT ATCTGGGAGC CTGGCAATAC CACTGCGCAT GAAGGCTCAT
  GCACATCTCT CTCTCCTGTT CTCTCTCTCT CCCTTTCTCC CTCTCCCCAC ACCTCTCCAT
  TGTCTTCCCT CTCCATTGGC TTCACTATGG CGGCCAGACC CAGCCACCAC TCAGAGATTA
  GGCGACTCTT CCCTCAAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366824592	MGP_WTSI_5_135487599	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237532813					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366824592	MGP_WTSI_5_135487599	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040583 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	457 bp downstream
Cpgi16736	CpG island 16736	1555 bp distal
Gm43372	predicted gene 43372	1621 bp upstream
Gm73578	predicted gene, 73578	258 bp downstream
Rr110217	regulatory region 110217	1018 bp proximal
Rr110218	regulatory region 110218	1418 bp proximal
Rr124503	regulatory region 124503	582 bp distal
Rr124504	regulatory region 124504	17 bp proximal
Tssr1661	transcription start site region 1661	1697 bp downstream
Tssr1662	transcription start site region 1662	998 bp downstream
Tssr1663	transcription start site region 1663	1430 bp downstream
Tssr1664	transcription start site region 1664	1448 bp downstream
Tssr49124	transcription start site region 49124	1964 bp downstream
Tssr49125	transcription start site region 49125	1953 bp downstream
Tssr49126	transcription start site region 49126	1884 bp downstream
Tssr49127	transcription start site region 49127	1828 bp downstream
Tssr49128	transcription start site region 49128	1715 bp downstream
Tssr53717	transcription start site region 53717	1017 bp downstream
Tssr53718	transcription start site region 53718	1033 bp downstream
Tssr53719	transcription start site region 53719	1083 bp downstream
Tssr53720	transcription start site region 53720	1128 bp downstream
Tssr53721	transcription start site region 53721	1385 bp downstream
Tssr53722	transcription start site region 53722	1402 bp downstream