rs237562287 SNP Detail

Summary

• ID
  rs237562287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24597729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTCTGAAT GAAAGAGGGC
  AGACTTTGTG GTTAGCCAGG AGAAAACAAG GAGTAAAAGG AAGGAGTGCT AGCCATCCTA
  GATTGGAGCT TAAGGAAAAA AGGCTGGTTC CTTGAGAGTT CCACTGTATC TTCCTTATCC
  TCTTGAACCC TGATGTACTC TCCTCCAGTC CTGACCTGGT GTCGGGGCCT CCTGAGACAC
  R
  TCAGCGCAGG AAGGCAGGGG CCTTGAGAGG ATAATTTGGG TGTGTGGGGA TGGACTGGCT
  CAGTTGAGTT CTTTGTTGTT GCCTCACCCG GGAGGAGGAG GCCCAGGTGG CTGGTCTGAT
  GGCTTGCCCA ACGCCATTCC CAAGGCCATG AGTCACCAAC TGCCCTACTG AAGCCCATGC
  CTGAGATATT GACTTATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364288760	MGP_WTSI_5_23898549	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237562287					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364288760	MGP_WTSI_5_23898549	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24597729 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	932 bp upstream
Atg9b	autophagy related 9B	588 bp upstream
Cpgi15597	CpG island 15597	1505 bp proximal
Rr112283	regulatory region 112283	72 bp proximal
Rr124925	regulatory region 124925	1071 bp proximal
Rr398998	regulatory region 398998	677 bp upstream
Rr398999	regulatory region 398999	1438 bp upstream
Tssr45411	transcription start site region 45411	909 bp upstream
Tssr45412	transcription start site region 45412	1657 bp upstream
Tssr50315	transcription start site region 50315	770 bp upstream
Tssr50316	transcription start site region 50316	724 bp upstream
Tssr50317	transcription start site region 50317	700 bp upstream
Tssr50318	transcription start site region 50318	237 bp upstream
Tssr50319	transcription start site region 50319	33 bp upstream