rs237571405 SNP Detail

Summary

• ID
  rs237571405
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:86828238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACAAACCA CACCGAGAGG GAGATGGTGA GGAAGAGGGC
  GGCGCCGCGC GAGGAGCGGC TCTACGGTCC AAGGAGGCCC CGCCCGCCCG CCGGGCTACC
  R
  GAGCTGCGCG CTCCCGGGCG TGACCGCGCT GCGCGCTCCA CAAGCGCGGG GGCTAGCGCA
  ACCGCGCTAG GCAAAAGAAA AAAAAAAAAA GCCTACAAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320830116	CHEV_3_86724853	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237571405					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86828238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13328	CpG island 13328	within coordinates
Cpgi13329	CpG island 13329	502 bp proximal
Dclk2	doublecortin-like kinase 2	79 bp upstream
Rr77821	regulatory region 77821	within coordinates
Tssr33913	transcription start site region 33913	583 bp upstream
Tssr33914	transcription start site region 33914	541 bp upstream
Tssr33915	transcription start site region 33915	518 bp upstream
Tssr33916	transcription start site region 33916	396 bp upstream
Tssr33917	transcription start site region 33917	366 bp upstream
Tssr33918	transcription start site region 33918	within coordinates