rs237588660 SNP Detail

Summary

• ID
  rs237588660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80635832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTACGTTTT CTGTGTTTCC
  TGGGGTTGGG AACTGTTGGT GGGCGTTTGC AGAGCTTGGT GCCCCATCCA CAGAGCAAGC
  AGTGTGCTCA CCCAGGCCCC AGTTTTGTTT TGCTTTTCTA AGATTTATTT ATTTATAATG
  AGTACACTGT AGCTGTCTTT AGATACACAC CAGAAGAGGG CATCGGGTTC CATTACAGAT
  R
  TTTGTGAACC ACCACATCAT TGCTGGGATT TGAACTCAGG ACCTCTGGAG GAGCAGTCAG
  TGCTCTTAAC CGCTGAGCCA CTTCTCCAGC CTGCCCAGGC CAGTTTTGTC CTAGTGTTTG
  TTTTCCCTCC AAAGCTCATG AACTAACTGC ATTTTTGCAG TGGGTACCCA TACACATTCA
  ACCTCAAACA TGTACCCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025215	MGP_WTSI_10_80262743	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237588660					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025215	MGP_WTSI_10_80262743	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80635832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	461 bp distal
Plekhj1	pleckstrin homology domain containing, family J member 1	1428 bp upstream
Rr435393	regulatory region 435393	1790 bp distal
Rr435394	regulatory region 435394	1383 bp distal
Rr435395	regulatory region 435395	1256 bp distal
Rr435396	regulatory region 435396	507 bp distal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94607	transcription start site region 94607	1888 bp downstream
Tssr94608	transcription start site region 94608	1382 bp downstream
Tssr94609	transcription start site region 94609	1356 bp downstream
Tssr94610	transcription start site region 94610	1241 bp downstream
Tssr94611	transcription start site region 94611	1046 bp downstream
Tssr98510	transcription start site region 98510	1995 bp upstream
Tssr98511	transcription start site region 98511	1782 bp upstream
Tssr98512	transcription start site region 98512	1699 bp upstream
Tssr98513	transcription start site region 98513	1422 bp upstream
Tssr98514	transcription start site region 98514	1100 bp upstream