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rs237594681 SNP Detail
Summary
  • ID
    rs237594681
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr3:90448725 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGAGGGGGTG ATGCGTGTAG
    CCTGTGCCAG GCGGCAACTG TGTCCAGAGG CCCAGAGTCT GACTCCAGCT GGGGCAGAAC
    TGGGCCAGGA TCTTCCTTAG GTAATGGGGC GAAGGGTGTC GTTGGGCCCT GATGAATACC
    TAAGGAATGG TTATGAGGGA GGAGAGGCTG ACAGGGTGTG GCCAGGAGGG GAGCCACACA
    W
    AATCTGATCT GCTGGAGGCA GAATTTGCTC TTTTCTAGAG ATGGGCAGTG GTGGTCTAAC
    ACCCTGAGCT CACTACCTTA GAGCCTATGC AAGGGGTAGA GGTGGGCTAA GGTTCCTATC
    CCTGTTTTGT TGCTTAGGCC TGAGGTCTCA GCCAGGCCTC GGGATGGAAG ATAAAAGCCC
    CTGCTTTCCT CTGTCTTGAT                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358834168 MGP_WTSI_3_90345340 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237594681 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss358834168 MGP_WTSI_3_90345340 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:90448725 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr580398 regulatory region 580398 247 bp distal
Rr580399 regulatory region 580399 19 bp distal
Rr580400 regulatory region 580400 1499 bp proximal
S100a16 S100 calcium binding protein A16 within coordinates
Tssr30222 transcription start site region 30222 1758 bp downstream
Tssr30223 transcription start site region 30223 1727 bp downstream
Tssr30224 transcription start site region 30224 245 bp downstream
Tssr30225 transcription start site region 30225 232 bp downstream
Tssr30226 transcription start site region 30226 205 bp downstream
Tssr30227 transcription start site region 30227 177 bp downstream
Tssr30228 transcription start site region 30228 142 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory