rs237596582 SNP Detail

Summary

• ID
  rs237596582
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:101167493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCCTAGT TCCCCCCAAC
  TCCTGGAAAC ATGTCAGAAA GTACAGAGTG GGTGCCTGTG GGATCAGCAT GCGGGGGGTG
  GTGGTGGTGA GGTGTGGGGC TGCTTTCTCC CGAGGCTACC GTGATAGACA GTTGTACCTT
  GGCTGGCAGC CTCTACCCCA TTTCCAGGAT GTCAGTCTCT GCAGACGTAT GGGGGAGGTG
  R
  GGAAGGGGTA TACAGAGCCT AGGGTGTGCC TGGGAATGTA CTCCCAGGAA GTGACTGGTT
  GAAAAGTCAG CAGATCTCCT GGGGGATAGA GGGGTGGGCT GAAGCTCTGT GGGTTGCCTC
  TCTCAGCCCT GACCTGTGAA CAGGGAGGCT GGGGGTTGGA GGAACACAGC TTCCCCCTGT
  TCCTGGGGGG ACATGCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395192974	MGP_WTSI_15_101100043	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237596582					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395192974	MGP_WTSI_15_101100043	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101167493 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nr4a1	nuclear receptor subfamily 4, group A, member 1			Intron
				Noncoding-Transcript-Variant
Rr370021	regulatory region 370021			1652 bp downstream
Rr510002	regulatory region 510002			1040 bp distal
Tssr133218	transcription start site region 133218			1738 bp downstream
Tssr133219	transcription start site region 133219			1716 bp downstream
Tssr133220	transcription start site region 133220			1621 bp downstream
Tssr133221	transcription start site region 133221			1561 bp downstream
Tssr133222	transcription start site region 133222			196 bp downstream
Tssr133223	transcription start site region 133223			464 bp upstream
Tssr133224	transcription start site region 133224			507 bp upstream
Tssr133225	transcription start site region 133225			518 bp upstream
Tssr133226	transcription start site region 133226			539 bp upstream
Tssr133227	transcription start site region 133227			547 bp upstream
Tssr133228	transcription start site region 133228			565 bp upstream
Tssr133229	transcription start site region 133229			576 bp upstream
Tssr133230	transcription start site region 133230			654 bp upstream
Tssr133231	transcription start site region 133231			686 bp upstream
Tssr133232	transcription start site region 133232			705 bp upstream
Tssr133233	transcription start site region 133233			733 bp upstream
Tssr133234	transcription start site region 133234			751 bp upstream
Tssr133235	transcription start site region 133235			784 bp upstream
Tssr133236	transcription start site region 133236			833 bp upstream
Tssr133237	transcription start site region 133237			855 bp upstream
Tssr133238	transcription start site region 133238			888 bp upstream
Tssr133239	transcription start site region 133239			930 bp upstream
Tssr133240	transcription start site region 133240			1022 bp upstream
Tssr133241	transcription start site region 133241			1039 bp upstream
Tssr133242	transcription start site region 133242			1047 bp upstream
Tssr133243	transcription start site region 133243			1073 bp upstream
Tssr133244	transcription start site region 133244			1094 bp upstream
Tssr133245	transcription start site region 133245			1138 bp upstream
Tssr133246	transcription start site region 133246			1163 bp upstream
Tssr133247	transcription start site region 133247			1251 bp upstream
Tssr133248	transcription start site region 133248			1271 bp upstream
Tssr136545	transcription start site region 136545			687 bp downstream
Tssr136546	transcription start site region 136546			809 bp downstream
Tssr136547	transcription start site region 136547			885 bp downstream
Tssr136548	transcription start site region 136548			895 bp downstream
Tssr136549	transcription start site region 136549			929 bp downstream
Tssr136550	transcription start site region 136550			1035 bp downstream
Tssr136551	transcription start site region 136551			1111 bp downstream