rs237597816 SNP Detail

Summary

• ID
  rs237597816
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24004993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGGCCAGAA TCTGGGGGTG GGGGGCCAGA
  GCCAGGGACC CTTCCGAACA CCGGTCCCGC ATCCCCAGAC CTCTAGGCTA GGAGTCGCTT
  CTGGAGCCAG GACCCTCCCG CCCGCTGGGG GCCCGTCCTC ACCGACGGCA GCAGGCCCTG
  M
  CTCTCGGACG ACGGAGCCGT GGCGGGTCCC TCAGCCTCAG TGCTTTGGGC CCCCGCCTTG
  GCTCCCGCCG TCACCTCAAG CTAGGGTCAC GGGGCGAGCA TGCGCAGGAT GAGGGGGCCC
  CCATTCCTTT GTCGAATTCC GTCTATCCGG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325327335	CHEV_17_23922986	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237597816					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24004993 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8693	CpG island 8693	within coordinates
Flywch2	FLYWCH family member 2	within coordinates
Rr523143	regulatory region 523143	within coordinates
Rr523144	regulatory region 523144	52 bp proximal
Rr523145	regulatory region 523145	353 bp proximal
Rr523146	regulatory region 523146	1361 bp proximal
Tssr146663	transcription start site region 146663	27 bp downstream
Tssr146664	transcription start site region 146664	72 bp downstream
Tssr146665	transcription start site region 146665	178 bp downstream