rs237604592 SNP Detail

Summary

• ID
  rs237604592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:114392553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCGCCGTG GAATCCGGTC
  CCCGCGGCGC AAACCAATTT GGTCCCAACG AGTCTTGCTT GTGTTGTTTT TTTTTTTTCC
  TTGCCCTCCG GCTAAATGAA TTGAGCCTCC TGGAGGGAGG GGAAAACGTC CGGGAGTCGC
  AGCAGTCCAA GTCCCCGCGC GCGCCGCCGG CCGCCCCGCC GCATGACGCG GCGGCAGGAG
  Y
  TCCTGCGTGG CGGCCGAGGC GCAGCCTCCC CCGCGGCGCG GTCGGCTCGG GCGCGCAGCT
  GCGCCTCGTG CGGGGGCCCC CGGCCCGCGG AAGCACGCGT GCCAAGTACG CACGCGCGCC
  CCACACGCTC CGCGCCCGTG CGCAGCCCTG CCGGGCCGCG GTCTCTATGC GCTCACACGC
  GCGCGCGCCC CACGCGGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss379005646	MGP_WTSI_9_114472603	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs237604592					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379005646	MGP_WTSI_9_114472603	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:114392553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22423	CpG island 22423	1784 bp distal
Cpgi22424	CpG island 22424	within coordinates
Rr383952	regulatory region 383952	175 bp upstream
Rr687643	regulatory region 687643	1723 bp distal
Rr687644	regulatory region 687644	874 bp proximal
Trim71	tripartite motif-containing 71	within coordinates
Tssr91844	transcription start site region 91844	232 bp upstream
Tssr91845	transcription start site region 91845	202 bp upstream
Tssr91846	transcription start site region 91846	182 bp upstream
Tssr91847	transcription start site region 91847	601 bp downstream
Tssr91848	transcription start site region 91848	712 bp downstream
Tssr91849	transcription start site region 91849	803 bp downstream
Tssr91850	transcription start site region 91850	830 bp downstream
Tssr91851	transcription start site region 91851	853 bp downstream