rs237639566 SNP Detail

Summary

• ID
  rs237639566
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:106051727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCAGACCT CCATGCCTGG
  TTGGGCCTGC TGCTCCCAGA ACACCCCCAG CCCATCCTCA CTACCAACAC AGCATCTCTT
  TTCCCGTATG TGGGGCTCTT TCTGCAAAGT CCTTCTACAG TGACTTCACT AGCCCCGCTG
  TGTTTTCTCC TTTCTTCTCA GATGCTAAGT ACATACGCAG TACTCACCCA GTATTTACTG
  R
  ACTAAAGATA GTCCTTTGCC TCTACTTTCA CCAAAGGTTT GCTCAGGGAA GGGGTGGGGG
  ATAAAGGAGA TTACTATTCA GAGGAAAATG ACTAGGACCA GAGAGGAGAG ACATGAGGAA
  GAGTATGGAT GGGACTGGGA TGACTAAGCC CCCATCCCTA GGGGGCTAAG AGGGAAGACT
  GGACTAAGAG AGTGGCTGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375910568	MGP_WTSI_8_107848995	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237639566					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375910568	MGP_WTSI_8_107848995	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:106051727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20926	CpG island 20926	751 bp proximal
Fbxl9	F-box and leucine-rich repeat protein 9	within coordinates
Rr185875	regulatory region 185875	within coordinates
Rr401090	regulatory region 401090	1033 bp upstream
Tmem208	transmembrane protein 208	1259 bp upstream
Tssr79133	transcription start site region 79133	1645 bp downstream
Tssr79134	transcription start site region 79134	1259 bp upstream
Tssr79135	transcription start site region 79135	1324 bp upstream
Tssr82642	transcription start site region 82642	1759 bp upstream
Tssr82643	transcription start site region 82643	1157 bp downstream
Tssr82644	transcription start site region 82644	1186 bp downstream