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rs237642089 SNP Detail
Summary
  • ID
    rs237642089
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr1:149981075 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TGCTC AACAGCCAGG ACAATTGTCA
Y
CCGTTCCCAG TTTGATGTTC CTGTA                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss915059808 MGP_WTSI_1_150105324 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237642089 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss915059808 MGP_WTSI_1_150105324 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:149981075 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ptgs2 prostaglandin-endoperoxide synthase 2 within coordinates
Tssr9248 transcription start site region 9248 1636 bp downstream
Tssr9249 transcription start site region 9249 1622 bp downstream
Tssr9250 transcription start site region 9250 1421 bp downstream
Tssr9251 transcription start site region 9251 1369 bp downstream
Tssr9252 transcription start site region 9252 1334 bp downstream
Tssr9253 transcription start site region 9253 1309 bp downstream
Tssr9254 transcription start site region 9254 1293 bp downstream
Tssr9255 transcription start site region 9255 1242 bp downstream
Tssr9256 transcription start site region 9256 1037 bp downstream
Tssr9257 transcription start site region 9257 1003 bp downstream
Tssr9258 transcription start site region 9258 987 bp downstream
Tssr9259 transcription start site region 9259 930 bp downstream
Tssr9260 transcription start site region 9260 878 bp downstream
Tssr9261 transcription start site region 9261 859 bp downstream
Tssr9262 transcription start site region 9262 838 bp downstream
Tssr9263 transcription start site region 9263 826 bp downstream
Tssr9264 transcription start site region 9264 777 bp downstream
Tssr9265 transcription start site region 9265 750 bp downstream
Tssr9266 transcription start site region 9266 661 bp downstream
Tssr9267 transcription start site region 9267 326 bp downstream
Tssr9268 transcription start site region 9268 256 bp downstream
Tssr9269 transcription start site region 9269 60 bp upstream
Tssr9270 transcription start site region 9270 100 bp upstream
Tssr9271 transcription start site region 9271 124 bp upstream
Tssr9272 transcription start site region 9272 154 bp upstream
Tssr9273 transcription start site region 9273 206 bp upstream
Tssr9274 transcription start site region 9274 224 bp upstream
Tssr9275 transcription start site region 9275 251 bp upstream
Tssr9276 transcription start site region 9276 266 bp upstream
Tssr9277 transcription start site region 9277 316 bp upstream
Tssr9278 transcription start site region 9278 337 bp upstream
Tssr9279 transcription start site region 9279 358 bp upstream
Tssr9280 transcription start site region 9280 375 bp upstream
Tssr9281 transcription start site region 9281 481 bp upstream
Tssr9282 transcription start site region 9282 516 bp upstream
Tssr9283 transcription start site region 9283 530 bp upstream
Tssr9284 transcription start site region 9284 545 bp upstream
Tssr9285 transcription start site region 9285 555 bp upstream
Tssr9286 transcription start site region 9286 639 bp upstream
Tssr9287 transcription start site region 9287 1152 bp upstream
Tssr9288 transcription start site region 9288 1268 bp upstream
Tssr9289 transcription start site region 9289 1285 bp upstream
Tssr9290 transcription start site region 9290 1441 bp upstream
Tssr9291 transcription start site region 9291 1487 bp upstream
Tssr9292 transcription start site region 9292 1606 bp upstream
Tssr9293 transcription start site region 9293 1635 bp upstream
Tssr9294 transcription start site region 9294 1655 bp upstream
Tssr9295 transcription start site region 9295 1671 bp upstream
Tssr9296 transcription start site region 9296 1693 bp upstream
Tssr9297 transcription start site region 9297 1702 bp upstream
Tssr9298 transcription start site region 9298 1728 bp upstream
Tssr9299 transcription start site region 9299 1750 bp upstream
Tssr9300 transcription start site region 9300 1767 bp upstream
Tssr9301 transcription start site region 9301 1901 bp upstream
Tssr9302 transcription start site region 9302 1931 bp upstream
Tssr9303 transcription start site region 9303 1993 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory