rs237648128 SNP Detail

Summary

• ID
  rs237648128
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:95016188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAAA ACATCTTAAG
  CTTCCTAGGG GCCTTTGTCT CTACATCGCC CAGGAAATGG CCACTGTCAC AGCCCCACCT
  TGTGTTATCC GCTTATGTGT GTAACTCCCT CATAAGATGA TACTTTTTAG AGCAAAGATG
  ATGGCTTTTC ATTTTTACAG TTCAAGAATG TAGACTATTG CCAGGCGGTG GTGGTGCATG
  Y
  CTTTAATCCC AGCACTTGGG AGGCAGAGGC AGGTGGATTT CTGAGTTCCA GGCCAGCCTG
  GTCTACAGAG TGAGTTCCAG GACAGCCAGG GATATACACA GAGAAACCCA GTCTCAAAAA
  AAACAAAATA ATAAATAATA ATAATACACT ATCTTTAAAC ATCTGGGCAT GGTGGCACAG
  TATCTTTAAA CATCTGGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358895198	MGP_WTSI_3_94912799	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237648128					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358895198	MGP_WTSI_3_94912799	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95016188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13496	CpG island 13496	1766 bp distal
Cpgi13497	CpG island 13497	1992 bp proximal
Gm65644	predicted gene, 65644	1365 bp downstream
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	1947 bp upstream
Rr367478	regulatory region 367478	1017 bp downstream
Rr367479	regulatory region 367479	1996 bp upstream
Rr580813	regulatory region 580813	1457 bp distal
Rr580814	regulatory region 580814	1227 bp distal
Rr580815	regulatory region 580815	754 bp distal
Rr580816	regulatory region 580816	1655 bp proximal
Tssr34417	transcription start site region 34417	1980 bp upstream
Tssr34418	transcription start site region 34418	1955 bp upstream