rs237659190 SNP Detail

Summary

• ID
  rs237659190
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91069225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAGTCTG CAGCGCTAGT
  TCCAGGACAG CAAAGGCTAC AGAGAAACAC TGTCTGGAAA ACCTAAATAA GTAAATAAAT
  AGCCAAGGCT GCAGAGAAAC CCTGGGAAAA CAAAACAAAG AAATAAGTAA ACCCAGCAGT
  GGTGGCGCAT GCCTTTAATC TCAGCACTTG GGAGGCAGAG GCAGGCGGAT TTCTGAGTTC
  A
  AGGCCAGCCT GGTCTACAGA GTGAGTTCCA GGACAGCCAG GGCTACACAG AGAAACCCTG
  TCTCGAAAAA CAAACAAACA AAACAACAAC AACAACAACA AAAAAGAATC CTAAAAAAGT
  TGTAAGATAT TAACTAGGAA GATTATGAGG GAAAATAAAT CACTTGAGTT TGTATAGGTC
  CACTTCGGGG TTTTGTTAGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SWR/J
ss175556120	SC_MOUSE_GENOMES_NOD-SHiLtJ_61536	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	FVB/NJ	I/LnJ	LEWES/EiJ	NON/ShiLtJ	NZW/LacJ	RF/J	RIIIS/J	SJL/J	SWR/J
rs237659190					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss175556120	SC_MOUSE_GENOMES_NOD-SHiLtJ_61536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91069225 () rs orientation: forward

Symbol	Name	Function Class
A330069E16Rik	RIKEN cDNA A330069E16 gene	523 bp downstream
Cpgi11902	CpG island 11902	1548 bp distal
Ddb2	damage specific DNA binding protein 2	1898 bp upstream
Rr397126	regulatory region 397126	1608 bp downstream
Rr560676	regulatory region 560676	1735 bp distal
Rr560677	regulatory region 560677	836 bp distal
Rr560678	regulatory region 560678	1582 bp distal
Rr560679	regulatory region 560679	1265 bp distal
Rr560680	regulatory region 560680	879 bp distal
Tssr18884	transcription start site region 18884	1735 bp downstream
Tssr18885	transcription start site region 18885	1696 bp downstream
Tssr25178	transcription start site region 25178	1959 bp upstream
Tssr25179	transcription start site region 25179	1915 bp upstream
Tssr25180	transcription start site region 25180	1891 bp upstream