rs237674440 SNP Detail

Summary

• ID
  rs237674440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100574263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gatctatgc ccttctccgg cctctgctgg
  tgccaggcac acccacaatg ccacatttac ttttaattaa aaAAATTTTT TGAGGCATGA
  ACCTCCATAC CTGGCtaatt taatttttaa tttttaattt Ggtgtatgtg cctgaagagg
  Y
  caaagaaagt ctgatcctct gggtctggag ttacaggagc tggtagcttg taagcagcct
  gatgtaggtg ctgggaactg aactctggct ctctgggata gcaggaaaca cttcatggct
  gagccatctc tgtagccccA AAGTGTGTGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325083835	CHEV_15_100506813	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237674440					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100574263 () rs orientation: forward

Symbol	Name	Function Class
Cela1	chymotrypsin-like elastase family, member 1	within coordinates
Rr509795	regulatory region 509795	1968 bp distal
Rr509796	regulatory region 509796	560 bp proximal
Tssr4720	transcription start site region 4720	1915 bp upstream
Tssr4721	transcription start site region 4721	808 bp upstream
Tssr133153	transcription start site region 133153	1951 bp downstream
Tssr133154	transcription start site region 133154	1749 bp downstream
Tssr136461	transcription start site region 136461	1886 bp upstream
Tssr136462	transcription start site region 136462	1794 bp upstream
Tssr136463	transcription start site region 136463	1764 bp upstream
Tssr136464	transcription start site region 136464	1723 bp upstream
Tssr136465	transcription start site region 136465	1700 bp upstream
Tssr136466	transcription start site region 136466	1665 bp upstream
Tssr136467	transcription start site region 136467	1662 bp upstream
Tssr136468	transcription start site region 136468	1020 bp upstream
Tssr136469	transcription start site region 136469	980 bp upstream
Tssr136470	transcription start site region 136470	968 bp upstream
Tssr136471	transcription start site region 136471	946 bp upstream
Tssr136472	transcription start site region 136472	935 bp upstream
Tssr136473	transcription start site region 136473	1702 bp downstream
Tssr136474	transcription start site region 136474	1732 bp downstream
Tssr136475	transcription start site region 136475	1791 bp downstream