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rs237711936 SNP Detail
Summary
  • ID
    rs237711936
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr7:19431295 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGAGGTGAT GGTACTCGCT
TGTGTTCCCA GAAGTTGAGA AGCTGCGGCA TAAGAATTGC AGAGCCTTCG AAGCCAGCTT
GAGTTACAGA ATGGGATCCT GTCTCAAGAA GCCAAAAGCC AATCGACCAA GCAAGTAATA
AATGTCTGTT CCTCCCAGCA TCCAGAAGGC TAAAGAAGGC AGGAGGATTC AAGGCCAACC
K
GGGCTACACA CTAATTGAGA AAGGAAACAA GAAGGGGCTG GGGACCCAGA TAGGAGGCAA
CCCTGGATCA GCTGGTGCCT GCCGAGGGTG AAAGAGCTGG ACACTCACGT CAGTTCTTGT
GTGACTTGGG AGCTCTGCAG CTCTTCCTGG ACCTGGTCAG ACAGCGTCTG CACCCAGCGC
AGGTAATCCC AGAAGCGGTT                                            

K = G/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754802 MGP_WTSI_7_20282719 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237711936 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754802 MGP_WTSI_7_20282719 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19431295 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E within coordinates
Cpgi18507 CpG island 18507 292 bp distal
Cpgi18508 CpG island 18508 1029 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 401 bp proximal
Gm71725 predicted gene, 71725 within coordinates
Rr155346 regulatory region 155346 695 bp distal
Rr167194 regulatory region 167194 within coordinates
Tssr2112 transcription start site region 2112 909 bp downstream
Tssr2113 transcription start site region 2113 879 bp downstream
Tssr2114 transcription start site region 2114 753 bp downstream
Tssr2115 transcription start site region 2115 725 bp downstream
Tssr2116 transcription start site region 2116 655 bp downstream
Tssr2117 transcription start site region 2117 601 bp downstream
Tssr2118 transcription start site region 2118 506 bp downstream
Tssr2119 transcription start site region 2119 529 bp upstream
Tssr2120 transcription start site region 2120 456 bp downstream
Tssr2121 transcription start site region 2121 430 bp downstream
Tssr2122 transcription start site region 2122 285 bp downstream
Tssr64880 transcription start site region 64880 1096 bp downstream
Tssr64881 transcription start site region 64881 1033 bp downstream
Tssr64882 transcription start site region 64882 974 bp downstream
Tssr64883 transcription start site region 64883 957 bp downstream
Tssr64884 transcription start site region 64884 929 bp downstream
Tssr64885 transcription start site region 64885 851 bp downstream
Tssr64886 transcription start site region 64886 816 bp downstream
Tssr64887 transcription start site region 64887 798 bp downstream
Tssr64888 transcription start site region 64888 580 bp downstream
Tssr64889 transcription start site region 64889 473 bp downstream
Tssr64890 transcription start site region 64890 439 bp downstream
Tssr64891 transcription start site region 64891 411 bp downstream
Tssr64892 transcription start site region 64892 380 bp downstream
Tssr64893 transcription start site region 64893 286 bp downstream
Tssr64894 transcription start site region 64894 95 bp upstream
Tssr64895 transcription start site region 64895 191 bp upstream
Tssr64896 transcription start site region 64896 217 bp upstream
Tssr70973 transcription start site region 70973 1041 bp upstream
Tssr70974 transcription start site region 70974 1008 bp upstream
Tssr70975 transcription start site region 70975 983 bp upstream
Tssr70976 transcription start site region 70976 931 bp upstream
Tssr70977 transcription start site region 70977 910 bp upstream
Tssr70978 transcription start site region 70978 887 bp upstream
Tssr70979 transcription start site region 70979 879 bp upstream
Tssr70980 transcription start site region 70980 865 bp upstream
Tssr70981 transcription start site region 70981 841 bp upstream
Tssr70982 transcription start site region 70982 812 bp upstream
Tssr70983 transcription start site region 70983 791 bp upstream
Tssr70984 transcription start site region 70984 731 bp upstream
Tssr70985 transcription start site region 70985 696 bp upstream
Tssr70986 transcription start site region 70986 667 bp upstream
Tssr70987 transcription start site region 70987 622 bp upstream
Tssr70988 transcription start site region 70988 603 bp upstream
Tssr70989 transcription start site region 70989 565 bp upstream
Tssr70990 transcription start site region 70990 546 bp upstream
Tssr70991 transcription start site region 70991 516 bp upstream
Tssr70992 transcription start site region 70992 504 bp upstream
Tssr70993 transcription start site region 70993 475 bp upstream
Tssr70994 transcription start site region 70994 460 bp upstream
Tssr70995 transcription start site region 70995 427 bp upstream
Tssr70996 transcription start site region 70996 401 bp upstream
Tssr70997 transcription start site region 70997 335 bp upstream
Tssr70998 transcription start site region 70998 315 bp upstream
Tssr70999 transcription start site region 70999 259 bp upstream
Tssr71000 transcription start site region 71000 134 bp downstream
Tssr71001 transcription start site region 71001 164 bp downstream
Tssr71002 transcription start site region 71002 224 bp downstream
Tssr71003 transcription start site region 71003 242 bp downstream
Tssr71004 transcription start site region 71004 270 bp downstream
Tssr71005 transcription start site region 71005 621 bp downstream
Tssr71006 transcription start site region 71006 654 bp downstream
Tssr71007 transcription start site region 71007 712 bp downstream
Tssr71008 transcription start site region 71008 818 bp downstream
Tssr71009 transcription start site region 71009 836 bp downstream
Tssr71010 transcription start site region 71010 980 bp downstream
Tssr71011 transcription start site region 71011 1013 bp downstream
Tssr71012 transcription start site region 71012 1049 bp downstream
Tssr71013 transcription start site region 71013 1675 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory