rs237716127 SNP Detail

Summary

• ID
  rs237716127
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110363138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGTTTTTA GATAAATGGT
  TTCACCTTGT TGCCTAGGCT GCTCTTGAAT TTACTGTGGC TGGCCTCGAA CCTGGGATCC
  TTCCTCTTCA GCTTCTTCAG TGCTGGGATT GCAGGTGCTG ACAACTAAGA AAAACCATTG
  TTTTACCTCA ATTTGCTTGT ATTGATGTCT GCACATAGCA ACAAAATTCA TTCCCAAGTT
  W
  AGGTTTGAAG GGATGTCTAG TGAAAAACAA AACTTTTCAC TAAATTACCA CATTACACAT
  TTTTGGGGGA ACCTTTGCCA AAGTTTTTCA CCTTGGCTCA GAAACATTTG GATCTTACTT
  AATAGTTCTT TAGTGTTGTA ACACAAAAGT TATTTTGTTG GAGTGTTATC TCCACACACA
  AAGCAAAATC CTCATGTTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378905131	MGP_WTSI_9_110436574	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237716127					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378905131	MGP_WTSI_9_110436574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110363138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22381	CpG island 22381			620 bp distal
Gm69936	predicted gene, 69936			1713 bp upstream
Rr687130	regulatory region 687130			1724 bp distal
Rr687131	regulatory region 687131			1703 bp distal
Rr687132	regulatory region 687132			1463 bp distal
Rr687133	regulatory region 687133			48 bp distal
Rr687134	regulatory region 687134			1201 bp distal
Rr687135	regulatory region 687135			972 bp distal
Rr687136	regulatory region 687136			1101 bp proximal
Setd2	SET domain containing 2			Intron
				Noncoding-Transcript-Variant
Tssr3033	transcription start site region 3033			1342 bp downstream
Tssr87391	transcription start site region 87391			1603 bp downstream
Tssr87392	transcription start site region 87392			1470 bp downstream
Tssr87393	transcription start site region 87393			1430 bp downstream
Tssr87394	transcription start site region 87394			1378 bp downstream
Tssr91630	transcription start site region 91630			1708 bp upstream
Tssr91631	transcription start site region 91631			1292 bp upstream
Tssr91632	transcription start site region 91632			1269 bp upstream
Tssr91633	transcription start site region 91633			1244 bp upstream
Tssr91634	transcription start site region 91634			1224 bp upstream
Tssr91635	transcription start site region 91635			1131 bp upstream
Tssr91636	transcription start site region 91636			1112 bp upstream