rs237730476 SNP Detail

Summary

• ID
  rs237730476
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:45355845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACCTTT CACCCACCCT
  GTCACTAAAC CCTTCTTTCT AAACTTCCAT CCTCGTTCTC TGGGTCGCTT GTGCTTGTGT
  TTCTTAATCC CCTCCCGGGC CCCTAACCCT ATCCTTCTGT ATACTTTTGC CTTTTCCCCC
  TCTCCGGGTC CCCGTCTCCC TGACCCTCTA TTGCTGGGGC CTTGTTCTCT TTTCTCTCTG
  K
  GTCTCCCCAA GCCCCGTCTT TATCCCTCTC TTCTTTTTCT GGGTTCTCTC CCTGCCTGTA
  CCCACCTCCC TGGGTCTTTG CCCTACGGCT CCCGTCTCCT CACTTCTCTG TATCTCCGCC
  ATATCTCTAA CTTGGGGTCC CTCCTGTGTC CCTCCACCCC ATCCGGTCTC TCCCTGGCCT
  ACAGGTCTCC TGAAGGAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371182942	MGP_WTSI_7_52961791	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237730476					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371182942	MGP_WTSI_7_52961791	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45355845 () rs orientation: forward

Symbol	Name	Function Class
Car11	carbonic anhydrase 11	1739 bp downstream
Cpgi19081	CpG island 19081	753 bp distal
Cpgi19082	CpG island 19082	79 bp proximal
Dbp	D site albumin promoter binding protein	within coordinates
Rr400318	regulatory region 400318	1406 bp downstream
Tssr66612	transcription start site region 66612	1129 bp downstream
Tssr66613	transcription start site region 66613	1114 bp downstream
Tssr66614	transcription start site region 66614	1072 bp downstream
Tssr66615	transcription start site region 66615	1029 bp downstream
Tssr66616	transcription start site region 66616	998 bp downstream
Tssr66617	transcription start site region 66617	968 bp downstream
Tssr66618	transcription start site region 66618	889 bp downstream
Tssr66619	transcription start site region 66619	201 bp downstream
Tssr66620	transcription start site region 66620	173 bp downstream
Tssr66621	transcription start site region 66621	707 bp upstream
Tssr66622	transcription start site region 66622	1391 bp upstream
Tssr66623	transcription start site region 66623	1478 bp upstream
Tssr66624	transcription start site region 66624	1730 bp upstream
Tssr66625	transcription start site region 66625	1774 bp upstream
Tssr72444	transcription start site region 72444	484 bp downstream