rs237735857 SNP Detail

Summary

• ID
  rs237735857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112640236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC TCTCCCGCGA CCTGGCCCCG
  Y
  GGAGCGGCCA CCCAAGGTCA CGCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170080	CHEV_12_113912013	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237735857					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112640236 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Akt1	thymoma viral proto-oncogene 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi5173	CpG island 5173			within coordinates
Gm30150	predicted gene, 30150			686 bp upstream
Rr369631	regulatory region 369631			1628 bp upstream
Rr473551	regulatory region 473551			1748 bp distal
Rr473552	regulatory region 473552			873 bp distal
Rr473553	regulatory region 473553			within coordinates
Rr473554	regulatory region 473554			464 bp proximal
Rr473555	regulatory region 473555			577 bp proximal
Rr473556	regulatory region 473556			620 bp proximal
Rr473557	regulatory region 473557			1180 bp proximal
Rr473558	regulatory region 473558			1645 bp proximal
Rr473559	regulatory region 473559			1836 bp proximal
Tssr115391	transcription start site region 115391			610 bp upstream
Tssr117876	transcription start site region 117876			1758 bp upstream
Tssr117877	transcription start site region 117877			214 bp downstream
Tssr117878	transcription start site region 117878			273 bp downstream
Tssr117879	transcription start site region 117879			391 bp downstream
Tssr117880	transcription start site region 117880			541 bp downstream
Tssr117881	transcription start site region 117881			572 bp downstream
Tssr117882	transcription start site region 117882			951 bp downstream
Tssr117883	transcription start site region 117883			972 bp downstream
Tssr117884	transcription start site region 117884			1024 bp downstream