rs237738579 SNP Detail

Summary

• ID
  rs237738579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75368422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCC CCACCCCCCC GCACCCGCAC
  M
  CCCCCCCCCC CCAGCTAGCC CGGTA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	C57BL/6NJ	QSi5/Ianm	SPRET/EiJ
ss922384613	MGP_WTSI_14_75130982	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	C	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	C57BL/6NJ	QSi5/Ianm	SPRET/EiJ
rs237738579					SNP	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss922384613	MGP_WTSI_14_75130982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75368422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	190 bp distal
Cpgi6737	CpG island 6737	112 bp proximal
Gm62951	predicted gene, 62951	361 bp upstream
Lcp1	lymphocyte cytosolic protein 1	148 bp upstream
Lrrc63	leucine rich repeat containing 63	101 bp upstream
Tssr4477	transcription start site region 4477	348 bp upstream
Tssr126606	transcription start site region 126606	125 bp upstream
Tssr126607	transcription start site region 126607	244 bp upstream
Tssr126608	transcription start site region 126608	291 bp upstream
Tssr126609	transcription start site region 126609	550 bp upstream
Tssr126610	transcription start site region 126610	602 bp upstream
Tssr126611	transcription start site region 126611	1039 bp upstream
Tssr126612	transcription start site region 126612	1064 bp upstream
Tssr129761	transcription start site region 129761	377 bp upstream
Tssr129762	transcription start site region 129762	360 bp upstream
Tssr129763	transcription start site region 129763	333 bp upstream
Tssr129764	transcription start site region 129764	39 bp upstream
Tssr129765	transcription start site region 129765	23 bp downstream
Tssr129766	transcription start site region 129766	593 bp downstream
Tssr129767	transcription start site region 129767	635 bp downstream