rs237743217 SNP Detail

Summary

• ID
  rs237743217
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122640211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCCGCC GCGAGTGTGG
  GTCGCTTCAG CAGCTGCCAG CCGGCCGCGG GCAGCGCAGG CCCCGGGCGC TGCGCCGAGG
  AGACGGGGCG CAGATGAGGA GCGGCGCCGG GCCGAGCCCT CGGCGCCGGG AACCGCGAGG
  CAGGCGACGG GAGAGGAGCT GCGCGGCGCG CCGGCCCGAG CCCCTCAGCT CTGCACCCCC
  K
  ACAGCGGCGG CGGAGGGAAC TGCGGCGGAG GAGACGGGAG GTGGCGGCGT CGGGGACGGC
  TCCGCGGAGG CTGCTCTAAT AGCATTTATC CGCCGCTGCC TCCCCTCTCG CCGCCGCCGC
  GGCATGTGGA CGCCGCTCAT TGGCCGAGAG AGCCCCCAGC GCGGCGCGGG CGGCGCGGCC
  CCGCCCCCTC CTCCGGCGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss366519168	MGP_WTSI_5_122952157	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs237743217					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519168	MGP_WTSI_5_122952157	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122640211 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	within coordinates
Cpgi16553	CpG island 16553	within coordinates
Gm43361	predicted gene 43361	1300 bp downstream
Gm57291	predicted gene, 57291	297 bp upstream
Rr378565	regulatory region 378565	1604 bp upstream
Rr399329	regulatory region 399329	1305 bp upstream
Rr619900	regulatory region 619900	1572 bp distal
Rr619901	regulatory region 619901	646 bp distal
Rr619902	regulatory region 619902	within coordinates
Rr619903	regulatory region 619903	30 bp proximal
Rr619904	regulatory region 619904	336 bp proximal
Tssr1626	transcription start site region 1626	1217 bp downstream
Tssr48697	transcription start site region 48697	1413 bp downstream
Tssr48698	transcription start site region 48698	535 bp downstream
Tssr48699	transcription start site region 48699	413 bp downstream
Tssr48700	transcription start site region 48700	338 bp downstream
Tssr48701	transcription start site region 48701	318 bp upstream
Tssr53124	transcription start site region 53124	1807 bp upstream
Tssr53125	transcription start site region 53125	1773 bp upstream
Tssr53126	transcription start site region 53126	1315 bp upstream
Tssr53127	transcription start site region 53127	925 bp upstream
Tssr53128	transcription start site region 53128	883 bp upstream
Tssr53129	transcription start site region 53129	867 bp upstream
Tssr53130	transcription start site region 53130	360 bp upstream
Tssr53131	transcription start site region 53131	3 bp upstream
Tssr53132	transcription start site region 53132	14 bp downstream
Tssr53133	transcription start site region 53133	44 bp downstream
Tssr53134	transcription start site region 53134	119 bp downstream
Tssr53135	transcription start site region 53135	135 bp downstream
Tssr53136	transcription start site region 53136	479 bp downstream
Tssr53137	transcription start site region 53137	583 bp downstream