rs237747593 SNP Detail

Summary

• ID
  rs237747593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23945197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGATGCGC TTCACTCCCC
  CGCGCCGGGC CAGGCGGCGG ATGGCGGGCT TGGTGATGCC CTGGATGTTA TCGCGGAGAA
  CCTTACGGTG GCGCTTAGCG CCGCCTTTGC CCAGGCCTTT TCCTCCCTTG CCGCGACCCG
  ACATGTCTTA GGAAGAATGG AAAATGGAGT CAGAGCTGAG AGTCGGTCCT TTATATAGCT
  R
  CTTGGCCTTG ATCTCCCACC CCCAACAGAA TCACACAAAC GAAAACCCGC CCGCCGGACG
  GTGACGTCAT AAACCCCGCC AATAAGACCT GGCGGGAAAG AACCGAAAGC GCCCGGGCGG
  GAAAGTGACG TCACAAATCC CTCCCATCAA CCATGCCCCG AAAGCGCGCC GGCGGGAAAA
  TGACATCACA AACCCCGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324291499	CHEV_13_23853083	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237747593					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23945197 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	within coordinates
Gm61378	predicted gene, 61378	234 bp upstream
Gm61381	predicted gene, 61381	1377 bp downstream
H3c1	H3 clustered histone 1	671 bp downstream
H4c1	H4 clustered histone 1	within coordinates
Rr388132	regulatory region 388132	within coordinates
Rr475945	regulatory region 475945	6 bp proximal
Rr475946	regulatory region 475946	1162 bp proximal
Tssr121749	transcription start site region 121749	26 bp upstream
Tssr121750	transcription start site region 121750	within coordinates
Tssr121751	transcription start site region 121751	9 bp downstream
Tssr121752	transcription start site region 121752	1148 bp downstream
Tssr121753	transcription start site region 121753	1164 bp downstream