rs237770705 SNP Detail

Summary

• ID
  rs237770705
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128769592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTACTCT TTCTCTCCGC
  ATTTCTGGGC TCAACCTCCA CTTTTTGGGG GGAAGGGTGG GTGAAGGAAT GAGTGCACAG
  TGCAAAGGTG GGGCGGCAGG GCGCAAGGCA ATGGGTGCGG CGGGTGCTAG ACCTGAGCCG
  CGGGTCTGGG CATCCCCGGA CCCTGGGTCT TGCGCCTGAG TCTATCTGCT GCTGGGGGCA
  K
  GGGGCGGGAA GGGGCGGGGT CTGGGGCGGT GTCCCAGAGA GGAGGCGGAG CCGGAGCCGG
  AGCCGGTGCT CCCAAGGCGT GCAGTAGTTG TACTTAGCTG GTCCTGGGGC AGCAGCGGGA
  AGGGACTGAA GAGGGGTGCT GAGGTGAAAG ATTGGAAGAC CCGGAAAGAT CAGCTAGATT
  TCGGAAACCA GAAACACCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss382212998	MGP_WTSI_10_128370779	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S5/SvEvBrd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs237770705					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382212998	MGP_WTSI_10_128370779	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128769592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	28 bp proximal
Itga7	integrin alpha 7	53 bp upstream
Rr441373	regulatory region 441373	1916 bp distal
Rr441374	regulatory region 441374	within coordinates
Rr441375	regulatory region 441375	1595 bp proximal
Rr441376	regulatory region 441376	1865 bp proximal
Tssr96480	transcription start site region 96480	28 bp upstream
Tssr96481	transcription start site region 96481	53 bp upstream
Tssr96482	transcription start site region 96482	59 bp upstream