rs237786399 SNP Detail

Summary

• ID
  rs237786399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32735962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCATCCT GCAGAAGAAG
  CCTCGCCACC AGCAGCTTCT GCCATCTCTC TCCTCCTTTT TCTTCAGCCA CAGGCTCCCA
  GACATGACAG CCATCATCAA AGAGATCGTT AGCAGAAACA AAAGGAGATA TCAAGAGGAT
  GGATTCGACT TAGACTTGAC CTGTATCCAT TTCTGCGGCT GTTCCTCTTT GCTTTTCTGT
  Y
  ACTCTGATAA CGTGGGAGTA GACGGATGCG AAAAATTTCT GTAGTTGGGG TGACTATAAC
  GTTTAATTCT GGGCGCATTT CTAGATCGTG CATATTGTGT CTCTTCCAGT GTATTCAACC
  TAGGGAGTGT TCGGCTAGAC GGAACTCATG CCTCCTTGCA AGTGTCAAGG CACGGATTGT
  TTTCTTGTCG AGCTCTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402294761	MGP_WTSI_19_32833052	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237786399					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402294761	MGP_WTSI_19_32833052	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32735962 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10762	CpG island 10762	52 bp distal
Gm36566	predicted gene, 36566	1150 bp upstream
Gm56643	predicted gene, 56643	1149 bp upstream
Gm58496	predicted gene, 58496	902 bp downstream
Gm58497	predicted gene, 58497	721 bp downstream
Pten	phosphatase and tensin homolog	within coordinates
Rr370486	regulatory region 370486	1880 bp downstream
Rr546563	regulatory region 546563	1651 bp distal
Rr546564	regulatory region 546564	1502 bp distal
Rr546565	regulatory region 546565	848 bp distal
Rr546566	regulatory region 546566	1921 bp proximal
Tssr5485	transcription start site region 5485	1062 bp downstream
Tssr5486	transcription start site region 5486	867 bp downstream
Tssr5487	transcription start site region 5487	827 bp downstream
Tssr155992	transcription start site region 155992	975 bp downstream
Tssr155993	transcription start site region 155993	925 bp downstream
Tssr155994	transcription start site region 155994	903 bp downstream
Tssr155995	transcription start site region 155995	151 bp downstream
Tssr158899	transcription start site region 158899	1224 bp upstream
Tssr158900	transcription start site region 158900	1179 bp upstream