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rs237789005 SNP Detail
Summary
  • ID
    rs237789005
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr16:22713431 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GAGCTGCCCA GCCACCACAG
TTCAGCAAAG TGCAGGTTTG GCTTTCTCCA TCTCCCAGCA GCCATCTTGG CTAGCCAGAG
AGCAAAGTCT AAAACCCGCT GTGGGATAGA TGGTGCCTTC CCCGAGGTTG ATTTTCACAA
CACTTGGGCT TTTCTTCTTG AAGCCCTCGG GAGAGCAGAT TATGATGTTT CAATAACACC
Y
GTGAAGGTTG CCTTGGGCAG GTTACCTCCC ACAACCCTGC CAAGACGCTC CCTGAATGAG
CAGCCAGAGT ATATATACTG CTTCAGAATG CCGGCATCTG ATTTCTTTCC CAGGCGGTGG
AGGGAGACTG TGACTTCCAC ATCCTGAAAC AAGACGGCCA GTTCAGGGTG ATGCACACCC
AGTGTCATTC CACCCCAGGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss395628353 MGP_WTSI_16_22894754 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237789005 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss395628353 MGP_WTSI_16_22894754 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr16:22713431 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Ahsg alpha-2-HS-glycoprotein within coordinates
Gm30505 predicted gene, 30505 295 bp upstream
Rr513336 regulatory region 513336 351 bp distal
Rr513337 regulatory region 513337 within coordinates
Tssr4818 transcription start site region 4818 1857 bp downstream
Tssr4819 transcription start site region 4819 650 bp upstream
Tssr4820 transcription start site region 4820 1266 bp upstream
Tssr137559 transcription start site region 137559 1904 bp downstream
Tssr137560 transcription start site region 137560 1861 bp downstream
Tssr137561 transcription start site region 137561 1836 bp downstream
Tssr137562 transcription start site region 137562 1510 bp downstream
Tssr137563 transcription start site region 137563 440 bp downstream
Tssr137564 transcription start site region 137564 410 bp downstream
Tssr137565 transcription start site region 137565 273 bp downstream
Tssr137566 transcription start site region 137566 264 bp downstream
Tssr137567 transcription start site region 137567 96 bp upstream
Tssr137568 transcription start site region 137568 115 bp upstream
Tssr137569 transcription start site region 137569 146 bp upstream
Tssr137570 transcription start site region 137570 161 bp upstream
Tssr137571 transcription start site region 137571 495 bp upstream
Tssr137572 transcription start site region 137572 518 bp upstream
Tssr137573 transcription start site region 137573 612 bp upstream
Tssr137574 transcription start site region 137574 633 bp upstream
Tssr137575 transcription start site region 137575 639 bp upstream
Tssr137576 transcription start site region 137576 1319 bp upstream
Tssr137577 transcription start site region 137577 1741 bp upstream
Tssr137578 transcription start site region 137578 1812 bp upstream
Tssr140504 transcription start site region 140504 289 bp upstream
Tssr140505 transcription start site region 140505 240 bp upstream
Tssr140506 transcription start site region 140506 149 bp downstream
Tssr140507 transcription start site region 140507 532 bp downstream
Tssr140508 transcription start site region 140508 576 bp downstream
Tssr140509 transcription start site region 140509 595 bp downstream
Tssr140510 transcription start site region 140510 610 bp downstream
Tssr140511 transcription start site region 140511 653 bp downstream
Tssr140512 transcription start site region 140512 1876 bp downstream
Tssr140513 transcription start site region 140513 1887 bp downstream
Tssr140514 transcription start site region 140514 1920 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory