rs237789774 SNP Detail

Summary

• ID
  rs237789774
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49429989 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAACGG AAGTAGACGC
  CCACTCATAT TTTCTTCAAT GTCAAGCAAA ATGAAAATAT TTCCAGGATG ATCGATCGCG
  GCTACCGGCT TCCAGTACTG CCTAGAAGCT GAAGAGGAGG TGGAGTGCCC GAGGAGACAA
  CTGCCACCGG GTCACCCGCG CGTGAGCGCG ACTCTGGGAG TGAAGCGAGA CGGAGGGAGA
  R
  CACACGTGTT ACCTGCTTTA TTTCGGGACT GTTTGGGTCT GTGCTCGCCC GGGGCAGCTC
  TCCGCCCGCC CGCCCGCGTG CGTGGAAGGC CTCCACAGAA CGCACCCACC GCTCAGCCGC
  CCCCGCTCGC CGCCCTCAGC CCAGCTTCAC AGCCGAGCTC GCCGCGGGCC GCAGGAAGCT
  GTAAGTACCG GCCTGGCCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324031623	CHEV_12_50484193	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237789774					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49429989 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	within coordinates
Foxg1	forkhead box G1	within coordinates
Gm34304	predicted gene, 34304	1378 bp upstream
Gm43517	predicted gene 43517	1968 bp upstream
Gm56518	predicted gene, 56518	1867 bp downstream
Rr465759	regulatory region 465759	189 bp distal
Rr465760	regulatory region 465760	within coordinates
Rr465761	regulatory region 465761	548 bp proximal
Tssr3838	transcription start site region 3838	1126 bp upstream
Tssr113389	transcription start site region 113389	1211 bp downstream
Tssr113390	transcription start site region 113390	1128 bp downstream
Tssr113391	transcription start site region 113391	539 bp downstream
Tssr113392	transcription start site region 113392	515 bp downstream
Tssr113393	transcription start site region 113393	404 bp downstream
Tssr113394	transcription start site region 113394	101 bp downstream
Tssr113395	transcription start site region 113395	711 bp upstream
Tssr113396	transcription start site region 113396	919 bp upstream
Tssr113397	transcription start site region 113397	1052 bp upstream
Tssr113398	transcription start site region 113398	1081 bp upstream
Tssr113399	transcription start site region 113399	1150 bp upstream
Tssr113400	transcription start site region 113400	1160 bp upstream
Tssr113401	transcription start site region 113401	1304 bp upstream
Tssr113402	transcription start site region 113402	1354 bp upstream
Tssr113403	transcription start site region 113403	1729 bp upstream
Tssr113404	transcription start site region 113404	1755 bp upstream
Tssr113405	transcription start site region 113405	1780 bp upstream
Tssr113406	transcription start site region 113406	1983 bp upstream
Tssr116231	transcription start site region 116231	1376 bp upstream