rs237790012 SNP Detail

Summary

• ID
  rs237790012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:37400162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGTGTGG CTCAGTGACA
  GGGTGTTTGC CTAGCAGAAC ACGTGAGTGC AATCAGAGTT GCTATAGAGG CTGAGTTTCT
  TGAAAAGCTA AAGCGTGCAA ACTCTAACTC ATATCTGTTC TCGAAAGTCT TGTCCAGAAC
  CACTGCAAGC AGCCTTCCCG CTTTGCCTTC CTCCACATAC CCTTTGTAGG GTTTCCTAGT
  Y
  TCCAGTCTGG ACCTCGGTTC CCGTACCTAA AGGCGGGCTT AGAGGGAGGA TAGGCTCAGG
  GGCGGAGACA GGAAAACAGA AATAGCCAAT TCGTCCTTAA TTCGAGGCCC TCGCGGGCCT
  CACCCCTGTT GTGAGGGTTG AGATTGGAAA GGAAGTGGGG AGGCTCCAAC CAGTCCTTCA
  CTCCCGCGCC CTCATGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377242043	MGP_WTSI_9_37296451	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237790012					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377242043	MGP_WTSI_9_37296451	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37400162 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
BB236558	expressed sequence BB236558			within coordinates
Cpgi21578	CpG island 21578			within coordinates
Gm69832	predicted gene, 69832			within coordinates
Msantd2	Myb/SANT-like DNA-binding domain containing 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr676695	regulatory region 676695			within coordinates
Rr676696	regulatory region 676696			382 bp proximal
Rr676697	regulatory region 676697			741 bp proximal
Tssr2827	transcription start site region 2827			196 bp upstream
Tssr84392	transcription start site region 84392			84 bp downstream
Tssr84393	transcription start site region 84393			122 bp upstream
Tssr84394	transcription start site region 84394			157 bp upstream
Tssr84395	transcription start site region 84395			415 bp upstream
Tssr88840	transcription start site region 88840			963 bp downstream