rs237790507 SNP Detail

Summary

• ID
  rs237790507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151922697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACTGAC CTTATCCCAC
  ATTTGCTCTG GCTGATCCAC CACCCCGGGG TTTGCCTGGC TGCCTCTGCG CCTTCCGGTT
  CCTTAGTTCC AAGGCATGGA TGCGCTCCTA GATTTGGACT GGATTGGGGT GGGGTGGGGG
  GTCTACTTAG ATCCATCCAG AGACAAAGGA GCTGACCTGC AAAGAGTTCC AGCAGGAGCC
  Y
  CGCTCCCCCT CCCTTCCCCC TTCTCCCTTA GCAGTCCACG TGTCTCTATT GTCTGCTCCC
  CCGCTTCAGG GAAAGACACA GCCTCGGATG TGTCAAAACC ACCACCCCCC GGCAGCAGGG
  AAATTAATTA CTGGGCGATT TTCACTTCCT CTCGCAGCGC TCGCCTGAGC TAGGCACCGG
  AACAGGACCG GCTGAGCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356144201	MGP_WTSI_2_151906513	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	T	T	T	C	T	C	T	C	C	T	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237790507					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	T	T	T	C	T	C	T	C	C	T	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356144201	MGP_WTSI_2_151906513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151922697 () rs orientation: forward

Symbol	Name	Function Class
AA387200	expressed sequence AA387200	within coordinates
Cpgi12434	CpG island 12434	45 bp proximal
Cpgi12435	CpG island 12435	728 bp proximal
Gm75114	predicted gene, 75114	within coordinates
Rr567274	regulatory region 567274	413 bp distal
Rr567275	regulatory region 567275	within coordinates
Rr567276	regulatory region 567276	671 bp proximal
Rr567277	regulatory region 567277	763 bp proximal
Scrt2	scratch family zinc finger 2	1040 bp upstream
Tssr20749	transcription start site region 20749	42 bp upstream
Tssr20750	transcription start site region 20750	86 bp upstream
Tssr20751	transcription start site region 20751	121 bp upstream
Tssr20752	transcription start site region 20752	137 bp upstream
Tssr20753	transcription start site region 20753	166 bp upstream
Tssr20754	transcription start site region 20754	188 bp upstream
Tssr20755	transcription start site region 20755	331 bp upstream
Tssr20756	transcription start site region 20756	455 bp upstream
Tssr20757	transcription start site region 20757	597 bp upstream
Tssr20758	transcription start site region 20758	825 bp upstream
Tssr20759	transcription start site region 20759	855 bp upstream
Tssr20760	transcription start site region 20760	1033 bp upstream
Tssr20761	transcription start site region 20761	1091 bp upstream