rs237799808 SNP Detail

Summary

• ID
  rs237799808
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:113858150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tcctgccct tgccccatta ctctctgcct
  gcttcccatc ttctaccctg gtccttctct ccctctgcct cccatgactg gtgtggtctc
  ccttataagt gagatccaag cattcctgct tgggccatcc ttcttgttta acttctttga
  R
  tcatgtgggg catatcatga gtactttatg gctaatatgc acttataaat aagtaaatac
  catgtatgtt cttttgggtg gtctaggcta cctcactctg gatgttgttt tctagttcta
  tccatttgcc tgcaaTTTTT TTTTGAGTCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320881288	CHEV_3_113767419	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237799808					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:113858150 () rs orientation: forward

Symbol	Name	Function Class
Col11a1	collagen, type XI, alpha 1	within coordinates
Rr70132	regulatory region 70132	251 bp proximal
Rr78696	regulatory region 78696	652 bp proximal