rs237805946 SNP Detail

Summary

• ID
  rs237805946
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140429695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGAGCCGA GTTCGGGCAA
  CGGCACGGCG CGCGCGGGGC CCCGGCGACG CGGCGGCCCC GCGGGCAGGA AGCGCGAGCG
  GCCCGAGCGC TGCAGCAGCA GCAGCGGCGG CGGCAGCAGC GGCGACGAGG ACGGCCCGGA
  GCTGGACGGG GCCCCCGGCG GCGGCAAGCG CACAGCCAGG CCGGCGACGG CGGGCAAGGC
  G
  GCCGGCGCGG CCGCGATCAT CACGGAGCCC GAGCACACGA AGGAGCGCGT CGTGAGTGGG
  GCGGGGGCGG TTGGCGGTTT TGGGGGGGAG GGGCGCCGTG GGGTCACGCC CCGCCCCTCC
  CCCACGCCGC GCGGGGGAAC TCCGGGGAGC CAGTCCCGGG CCGGGGGAGG GGGGGGACCG
  GGTGTGCGCG GCCACGCGGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss363501336	MGP_WTSI_4_140258299	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs237805946					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363501336	MGP_WTSI_4_140258299	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140429695 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15195	CpG island 15195	within coordinates
Gm69527	predicted gene, 69527	1114 bp upstream
Gm69529	predicted gene, 69529	1914 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	660 bp downstream
Rr603518	regulatory region 603518	1833 bp distal
Rr603519	regulatory region 603519	1125 bp distal
Rr603520	regulatory region 603520	901 bp distal
Rr603521	regulatory region 603521	953 bp distal
Tssr39975	transcription start site region 39975	1899 bp downstream
Tssr39976	transcription start site region 39976	1855 bp downstream
Tssr39977	transcription start site region 39977	1771 bp downstream
Tssr39978	transcription start site region 39978	947 bp downstream
Tssr39979	transcription start site region 39979	921 bp downstream
Tssr39980	transcription start site region 39980	875 bp downstream
Tssr39981	transcription start site region 39981	863 bp downstream
Tssr39982	transcription start site region 39982	836 bp downstream
Tssr39983	transcription start site region 39983	765 bp downstream
Tssr39984	transcription start site region 39984	545 bp downstream
Tssr39985	transcription start site region 39985	462 bp downstream
Tssr39986	transcription start site region 39986	422 bp downstream
Tssr39987	transcription start site region 39987	234 bp downstream
Tssr39988	transcription start site region 39988	186 bp downstream
Tssr39989	transcription start site region 39989	146 bp downstream
Tssr44273	transcription start site region 44273	1295 bp upstream
Tssr44274	transcription start site region 44274	14 bp downstream
Tssr44275	transcription start site region 44275	1282 bp downstream