rs237808024 SNP Detail

Summary

• ID
  rs237808024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:86285943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTCAACCA TTTACTACAT
  ATCCTGTATT TCTAAGACTT CCAGACATTC AATTCCACCG GTTTATTGCT GCAAATAGCT
  TCTTACCTCC TCTTCTCCAC TGCTGTCATC TTCATCTTCT GACATTTCTT CATCTTCACT
  ATCCTCTTCC ACCTCCTTTG GAGGAGGAGC CATTTTCTTG GCCTCACCGT GGGTTTTGCC
  R
  GCCTACAAAC GCACACAAAA ATTGCACGCA TTTTCAGTCA CTTTGCCTTT GGCCACCACC
  TTTTTCTTAC TAAAGGACAC AAGCATAAAG ACTTCTTCTT GGCCAGGCAT GGCATTCTCC
  TGGCAGTTTT TTCTGCGAAC CGCGCATAAT TTTTTTTTCC TTCTCACAGA TAACTGAGCA
  GACAGAACTC TACACCAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350367744	MGP_WTSI_1_88254796	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237808024					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350367744	MGP_WTSI_1_88254796	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:86285943 () rs orientation: forward

Symbol	Name	Function Class
C130036L24Rik	RIKEN cDNA C130036L24 gene	1363 bp upstream
Cpgi503	CpG island 503	331 bp proximal
D1Mit516	DNA Segment, Chr 1, Massachusetts Institute of Technology-516	113 bp distal
Gm71192	predicted gene, 71192	1431 bp downstream
Ncl	nucleolin	within coordinates
Rr29752	regulatory region 29752	within coordinates
Rr396146	regulatory region 396146	1094 bp upstream
Snord82	small nucleolar RNA, C/D box 82	1894 bp upstream
Tssr142	transcription start site region 142	1190 bp downstream
Tssr7744	transcription start site region 7744	1794 bp downstream
Tssr7745	transcription start site region 7745	1588 bp downstream
Tssr7746	transcription start site region 7746	1160 bp downstream
Tssr7747	transcription start site region 7747	1108 bp downstream
Tssr7748	transcription start site region 7748	927 bp downstream
Tssr7749	transcription start site region 7749	1332 bp upstream
Tssr7750	transcription start site region 7750	1417 bp upstream
Tssr12774	transcription start site region 12774	1893 bp upstream
Tssr12775	transcription start site region 12775	1757 bp upstream
Tssr12776	transcription start site region 12776	1570 bp upstream
Tssr12777	transcription start site region 12777	1149 bp upstream
Tssr12778	transcription start site region 12778	1072 bp upstream
Tssr12779	transcription start site region 12779	1053 bp upstream
Tssr12780	transcription start site region 12780	1000 bp upstream
Tssr12781	transcription start site region 12781	952 bp upstream
Tssr12782	transcription start site region 12782	877 bp upstream
Tssr12783	transcription start site region 12783	843 bp upstream
Tssr12784	transcription start site region 12784	816 bp upstream
Tssr12785	transcription start site region 12785	787 bp upstream
Tssr12786	transcription start site region 12786	within coordinates
Tssr12787	transcription start site region 12787	255 bp downstream
Tssr12788	transcription start site region 12788	749 bp downstream
Tssr12789	transcription start site region 12789	797 bp downstream
Tssr12790	transcription start site region 12790	1137 bp downstream
Tssr12791	transcription start site region 12791	1260 bp downstream
Tssr12792	transcription start site region 12792	1730 bp downstream