rs237812853 SNP Detail

Summary

• ID
  rs237812853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26063342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTGCAAC AGGTGGGTCA
  GTATTGAATG CGGAGCGGCT GCCCAGAGCC TGGCATCCGC CCTAAGTGCC CAGTCCGCCC
  CGCGCACCTC CTCGGGAAAC TCCTCGCCGA CCAGCGACAG GATCAGAGAC GTCTTCCCCA
  CCTGGGCTGC GCGGGGAGAG GGAACAGTAG TCAGGAGCAC CGCCGAGGTC ACGGCGACCC
  Y
  ACCGGTCTTC CCGCGGCCCC AGCGCACCTA CCCTCGCCCA GCAGCAGGAT GCGAACATCG
  CGCCGCATGG CTGCTGCCCG CAGCAGCACC CCAAACCCAC CCCTCCCGGC CCGGCCCGGC
  CCAAGTAGAC CCAATCCCAA CCCCAACCCT CTCCTTCAAC CCGCTCAGGC CCCCGCACTT
  CCTGTCTTCA GTACCGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397885929	MGP_WTSI_17_25981313	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237812853					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397885929	MGP_WTSI_17_25981313	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26063342 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8787	CpG island 8787	within coordinates
D17Jcs48	DNA segment, Chr 17, John C. Schimenti 48	581 bp distal
Rhot2	ras homolog family member T2	within coordinates
Rr523682	regulatory region 523682	473 bp proximal
Tssr146867	transcription start site region 146867	51 bp downstream
Tssr146868	transcription start site region 146868	76 bp downstream
Tssr146869	transcription start site region 146869	120 bp downstream
Tssr146870	transcription start site region 146870	146 bp downstream
Wdr90	WD repeat domain 90	403 bp downstream