rs237813556 SNP Detail

Summary

• ID
  rs237813556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122554214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAATTTAA AGGAGGAAGC
  ATTTGTTTTG TTCATGGACT CAGAGATTTC AATCTACAGT CAAGCATATA GTTCCATTCA
  TGCAAAACAC AGGTCACCTC CCCTGACTTT CTGCATGGGT TTGTTGGGCT ATGGCCTTCA
  CCCACTGGCC AATCTCCCCG CCCCCTCTTT TATTTGATTG GTTGTTTGTG ACAGAGTCTG
  R
  ATGGGTAGTC CAATGGCTGG CCTCCAACTC ATGATCCTCC TGTCTCAGCC TCTTGAGTAC
  TGAGATCAGA GGATGTGCTA CCTGCTTTAT ATGAACGCTT TTGCAAAAAC AAATCATGAT
  ACACAACATG GCTTTCAAGC TAGAAGTGCG TGACTAAAGT CAAGAAACTG TGCTCAAAAC
  CTGAAGAGAT TCTGCAGCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369908821	MGP_WTSI_6_122527273	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237813556					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369908821	MGP_WTSI_6_122527273	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122554214 () rs orientation: forward

Symbol	Name	Function Class
Apobec1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	537 bp downstream
Tssr1999	transcription start site region 1999	933 bp downstream
Tssr58682	transcription start site region 58682	540 bp upstream
Tssr58683	transcription start site region 58683	616 bp upstream
Tssr58684	transcription start site region 58684	1152 bp upstream
Tssr62861	transcription start site region 62861	651 bp downstream
Tssr62862	transcription start site region 62862	707 bp downstream
Tssr62863	transcription start site region 62863	736 bp downstream
Tssr62864	transcription start site region 62864	755 bp downstream
Tssr62865	transcription start site region 62865	796 bp downstream
Tssr62866	transcription start site region 62866	922 bp downstream
Tssr62867	transcription start site region 62867	1008 bp downstream
Tssr62868	transcription start site region 62868	1196 bp downstream
Tssr62869	transcription start site region 62869	1408 bp downstream