rs237820538 SNP Detail

Summary

• ID
  rs237820538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36006149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTGCTTG AGGCTAAGAT
  GAAGAAATTC AGATTGGTTG CATTGAGGAA GATATCTCAA AAAAAAAAAA AAAGTCTAAC
  CTAGACTCTA CCCTGTGGTT TACTACTATG AAGAGTGTTT TGATTGATCA AGCACAGCAA
  GCTTAGAAAG AAAAATTACA AAATTATGGT TCAAATAATA AAGGGGCACC AGGAAGTAGA
  R
  TGGAGCTAAA TCCTGTGTTC AAGGATATTA AATGGAATTA AGGGAGTGAA GGCCTCAGAG
  CAATATCTTA CCCAGTCAAG TTTATTGTTT ATGTGTTTGC AGTTCAACAA GGGCTAGTTA
  TATCATGTTA GGCATTTTTA TTACCTGGTT ATTGTTTTCA TTTGGACTTT TAATCTGAAA
  TGAATACAAA CTAGAAATGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084826	CHEV_4_35953182	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237820538					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36006149 () rs orientation: forward

Symbol	Name	Function Class
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	142 bp upstream